Scaffold Ga0211735_11369894

Overview

Basic Information

• Taxon OID: 3300020162
• Scaffold ID: Ga0211735_11369894
• Source Dataset Name: Freshwater lake microbial communities from Lake Erken, Sweden - P4710_201 megahit1
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: SciLifeLab
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3274
• Total Scaffold Genes: 10
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (10.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Lake Microbial Communities From Lake Erken, Sweden

Source Dataset Sampling Location

• Location Name: Lake Erken, Sweden
• Coordinates
  • Lat. (^o): 59.83763399
  • Long. (^o): 18.6203826
  • Depth (m): 8 to 14

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001754	Metagenome / Metatranscriptome	641	Y
F003291	Metagenome / Metatranscriptome	495	Y
F010916	Metagenome / Metatranscriptome	297	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0211735_1136989410	F001754	N/A	LYKGRESERVHHPNLKIKNYNMSTIANPFKNFSASKMSNNPRFEVVVSFTDFMGKSHNIVCKTRKKLVEANQFLKMFKSESVKINSILREYPVSMGKFPKKFHNEIKSDLQSAGFATISKYLLK
Ga0211735_113698945	F010916	AGAAG	MSISKQIHTDLLDMVSKHDYSYMMSDSHDVWESGMVYEKHIKAKIHALCAIHREDAEALYNEVKAVAGPDYTDYDSKGYGLKYRVINQWFEVYIGLDTISS
Ga0211735_113698948	F003291	N/A	MNKNTESLVSVFNQDELAEIMTALAGYVNIKRKQGRSTGITTQAFNKITDALLVSNYMNAVEIKPNSNAPMGSAEYKAYEAMYDSDVRAHS