Scaffold Ga0211735_10641743

Overview

Basic Information

• Taxon OID: 3300020162
• Scaffold ID: Ga0211735_10641743
• Source Dataset Name: Freshwater lake microbial communities from Lake Erken, Sweden - P4710_201 megahit1
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: SciLifeLab
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 27499
• Total Scaffold Genes: 36
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 9 (25.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (25.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Lake Microbial Communities From Lake Erken, Sweden

Source Dataset Sampling Location

• Location Name: Lake Erken, Sweden
• Coordinates
  • Lat. (^o): 59.83763399
  • Long. (^o): 18.6203826
  • Depth (m): 8 to 14

Associated Families

Family	Category	Number of Sequences	3D Structure?
F039637	Metagenome / Metatranscriptome	163	N
F054031	Metagenome / Metatranscriptome	140	Y
F057377	Metagenome / Metatranscriptome	136	N
F071229	Metagenome / Metatranscriptome	122	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0211735_1064174312	F039637	N/A	MKKNTDTIDELETDDEALREAGMREGTRKASKWKMRPCVPGTISIIRSNMLEKRDEFWFVAAFAFVHIAPLEDVLAVDNDAIAFNRAVRHWQLDNLDSIAAQDELSAIVGAAWNRVNAAETKAQHQSPGSTTSGK
Ga0211735_1064174313	F057377	N/A	MKSVFSTRDIKLAAILCTLGFEFESPSSPASRIRRESGEESTVFHFISKSPTGQIADEVMRSFSEGADFVAAAPESPLAYMLAVLRNRDSLVAVIKSTPRQIVFERNGKIISISEDATEADKKRFAKFI
Ga0211735_1064174335	F071229	AGGAGG	MSDTTAIVAACLVMMSLYTTFQLGIECERERARKARRRRFEEDQE
Ga0211735_1064174336	F054031	N/A	IAADRDRAEALPESAWTTETPETEAAVAASGTAYGIPLRECSRRLERQRNALHDLLARRSSK