Scaffold Ga0211726_11067705

Overview

Basic Information

• Taxon OID: 3300020161
• Scaffold ID: Ga0211726_11067705
• Source Dataset Name: Freshwater lake microbial communities from Lake Erken, Sweden - P4710_101 megahit1
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: SciLifeLab
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3584
• Total Scaffold Genes: 12
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (8.33%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Lake Microbial Communities From Lake Erken, Sweden

Source Dataset Sampling Location

• Location Name: Lake Erken, Sweden
• Coordinates
  • Lat. (^o): 59.83763399
  • Long. (^o): 18.6203826
  • Depth (m): 14 to 20

Associated Families

Family	Category	Number of Sequences	3D Structure?
F018910	Metagenome / Metatranscriptome	232	Y
F061799	Metagenome	131	N
F105166	Metagenome	100	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0211726_1106770511	F061799	N/A	MEGFENIKKTLEKALGVRFKVMDITEDGTLEEDKKLFTKMINHLEKLVAHEHKIFTTTGIDTSTIVSPYWTMMEEILQFTFNDEVASIVWWYVYERKNAAGEIMAWEDEDGVEYFFKTPGDLYELIVYKFDL
Ga0211726_110677052	F105166	N/A	MTLKEKYKLGRKFAKQGDLIQADRMFDLCIVHLSKETINGAREIEGVDINLWKTRVWTAVEKAGLLPD
Ga0211726_110677056	F018910	N/A	MKNLITEEQKTKLKASFNRFMNITIVAATLIAGFGLGYYFNELKMKPKAVNETILNKEVRIAIDSEDKLIMMDRKTGSYTIYSDSVGRIIFKMYASKIAAPVLTK