NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0211726_11024845

Scaffold Ga0211726_11024845


Overview

Basic Information
Taxon OID3300020161 Open in IMG/M
Scaffold IDGa0211726_11024845 Open in IMG/M
Source Dataset NameFreshwater lake microbial communities from Lake Erken, Sweden - P4710_101 megahit1
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterSciLifeLab
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1559
Total Scaffold Genes6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (66.67%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Lake Microbial Communities From Lake Erken, Sweden

Source Dataset Sampling Location
Location NameLake Erken, Sweden
CoordinatesLat. (o)59.83763399Long. (o)18.6203826Alt. (m)Depth (m)14 to 20
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F009071Metagenome / Metatranscriptome323Y
F012341Metagenome / Metatranscriptome281Y

Sequences

Protein IDFamilyRBSSequence
Ga0211726_110248451F012341GGAMTNLDELFEIVTKVIASPHTTITEHDKRRAIQVFLGFDDYLIDNVPEYCGDTEFGEIDFGGYAAGVLDELEGK
Ga0211726_110248453F009071GGALLLWKGLMPFFPDCYDEWGLYKITYDGDHKMYDMLFEGTEEQCRQYAYENYTDKEQTNMCLMDWEAREWDV

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