Scaffold Ga0211726_11003650

Overview

Basic Information

• Taxon OID: 3300020161
• Scaffold ID: Ga0211726_11003650
• Source Dataset Name: Freshwater lake microbial communities from Lake Erken, Sweden - P4710_101 megahit1
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: SciLifeLab
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 6333
• Total Scaffold Genes: 18
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 13 (72.22%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (50.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Crocinitomicaceae → unclassified Crocinitomicaceae → Crocinitomicaceae bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Lake Microbial Communities From Lake Erken, Sweden

Source Dataset Sampling Location

• Location Name: Lake Erken, Sweden
• Coordinates
  • Lat. (^o): 59.83763399
  • Long. (^o): 18.6203826
  • Depth (m): 14 to 20

Associated Families

Family	Category	Number of Sequences	3D Structure?
F003750	Metagenome / Metatranscriptome	470	Y
F009750	Metagenome	313	Y
F010398	Metagenome	304	Y
F070110	Metagenome	123	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0211726_110036501	F070110	N/A	MILDDFPIVIWFIHKKKNRYYLYDSINQLVMIRDEKRKKELYDYCENNGIDVQEEF
Ga0211726_1100365016	F009750	N/A	MKEIIEAICQNGTFKHNKIYRPHLTDRLGLALKYPEGSECIIWTNGKKYYAVCEAFGAIFTINIPQNLGDNIWAAFKTQYEGNYVYQDI
Ga0211726_110036504	F010398	AGGAG	MEISIEGSVEVNYHLMIDEDVFNDCCEEAGLDPANFKKFTKAQWDELNPHLIQAVVDNVANDDYTEIHEESTVYADTLTISENYKMTTVYYGENRKLESIEIE
Ga0211726_110036509	F003750	GGAG	MTLDIINRTMQVFLYTGGIVAFWQITKYMPKVFYTTLECISVMTCSVLCITPIALILEYILAGNIDTTMMFAGSLAGVGLLSGIWMVMVQSSRELQGKKQYQYVIL