Scaffold Ga0211726

Basic Information
Taxon OID	3300020161 Open in IMG/M
Scaffold ID	Ga0211726_10955119 Open in IMG/M
Source Dataset Name	Freshwater lake microbial communities from Lake Erken, Sweden - P4710_101 megahit1
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	SciLifeLab
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300020161 Open in IMG/M

Scaffold ID

Ga0211726_10955119 Open in IMG/M

Source Dataset Name

Freshwater lake microbial communities from Lake Erken, Sweden - P4710_101 megahit1

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

SciLifeLab

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	45244
Total Scaffold Genes	44 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	39 (88.64%)
Novel Protein Genes	4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	3 (75.00%)
Associated Families	4

Scaffold Components

Scaffold Length (bps)

45244

Total Scaffold Genes

44 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

39 (88.64%)

Novel Protein Genes

4 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

3 (75.00%)

Associated Families

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	(Source: UniRef50)

Taxonomy

All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Lake Microbial Communities From Lake Erken, Sweden

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Lake Microbial Communities From Lake Erken, Sweden

Source Dataset Sampling Location
Location Name	Lake Erken, Sweden
Coordinates	Lat. (^o)	59.83763399	Long. (^o)	18.6203826	Alt. (m)	Depth (m)	14 to 20
Location on Map

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Source Dataset Sampling Location

Location Name

Lake Erken, Sweden

Coordinates

Lat. (^o)

59.83763399

Long. (^o)

18.6203826

Alt. (m)

Depth (m)

14 to 20

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001360	Metagenome / Metatranscriptome	714	Y
F021091	Metagenome / Metatranscriptome	220	Y
F056543	Metagenome	137	Y
F098749	Metagenome	103	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0211726_1095511925	F021091	N/A	MNDWKKFTDVNGDFQLANFLYKSINDLMKQSLDMGTLLSNDQQKLRAYKEQIKKLFKNKWFELADSLEFFDIIEKCTCFIEERDFYCDVCKGSRYKLSSYLTSDEIREVGIFFNAAQNAELAGKLQKSLMRALDELSEM
Ga0211726_1095511940	F098749	GGA	MYKRSWILHHWIKCIISQSVPINDIGFIFEVSPDDTATIQALESWRKFDKRIPYFEIKIREDIPHFEHENNGRQWSMSKYVNMVSLRNSLLESVRKIQPEYYFSLDSDILLTNTNTIELLIAHIKSGADAVNPLMFMTPFGTMYPSVMDWRLDVPTKAFRKESYQLGTYFQSDVIMAAKMMSKDVYNNVNYTLHEQGEDVGWSLECKKAGFKLYSASYIYAPHIMSEVMYESFLSNGDNRQELLMTSYAKV
Ga0211726_1095511942	F001360	AGGAG	MSLAKFRKVHSKTGAGRFVVSEGIAPAAYLLPHPGLPTWYSDSEDDRFEIVITKGTILSVVADANGDARIVPANGTASSQGWGDVMPSWDPLDGATPSSTTGSVDTISVGAYSVPIGCAQYDLYRPFDKGTSQGAGFITHGYVEYPMVAGVNADVTVGSLIRADHMGRPVAFAATTAAAGAYPWLQVGKVVEVEQFATNFDDGLLSYMQLPSDPGALKTVYELTRAGTYSGKLGIRANLDVTNVIGAFRVNLTL
Ga0211726_109551198	F056543	GGA	MKKVEWCGCMQVRSPKEGFADIFSRELVGGKPVGELYELFDVKSWEEFKDELSDVAWGFGRILGGLMNKAYVRVPGDQIHYRKVVDRVEEYGCMRSRRFLIDGECPNKK

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0211726_10955119

Overview

Ecosystem & Geography

Associated Families

Sequences