Scaffold Ga0211726_10945279

Overview

Basic Information

• Taxon OID: 3300020161
• Scaffold ID: Ga0211726_10945279
• Source Dataset Name: Freshwater lake microbial communities from Lake Erken, Sweden - P4710_101 megahit1
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: SciLifeLab
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1510
• Total Scaffold Genes: 3
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium 13_1_20CM_4_56_7 (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Lake Microbial Communities From Lake Erken, Sweden

Source Dataset Sampling Location

• Location Name: Lake Erken, Sweden
• Coordinates
  • Lat. (^o): 59.83763399
  • Long. (^o): 18.6203826
  • Depth (m): 14 to 20

Associated Families

Family	Category	Number of Sequences	3D Structure?
F068610	Metagenome / Metatranscriptome	124	N
F097235	Metagenome / Metatranscriptome	104	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0211726_109452792	F097235	AGGA	MYGQMMRKRKMDGMGRMGAEVETIEFTPPKELRLEGDSGTAMVDWRTTPRGTIEIIGFDGITLGAVGKQGMEDMEEAEGAEMEMDDMEEEA
Ga0211726_109452793	F068610	N/A	NSQLTDSWRFGEFAPAAKEFYKYGFMGFVGDFMVKVLQFPLRFNATATGRNYTLVLPYKNVAATEGLRSEFNGDYDRAQYQISYINNPRALRVLPFRPEAVNPNMPFMVRDYGGRWKFATNDLGADCSGRPIDNSRGNKGKFIADFQLAVKPEHPEWLEAIFHKVNGACPVIIAGCAEDPGDPAQNYNSANGVCNPTLQFTAVANDAGNFVIGTTGILCDGNIVTNAGISEASVAALVVALQAVWDAEFGATSGTWSVVSGNVIQLASSAFPTATEVVPCTNVTLEFAI