Scaffold Ga0211726_10928846

Overview

Basic Information

• Taxon OID: 3300020161
• Scaffold ID: Ga0211726_10928846
• Source Dataset Name: Freshwater lake microbial communities from Lake Erken, Sweden - P4710_101 megahit1
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: SciLifeLab
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2744
• Total Scaffold Genes: 10
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 7 (70.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Lake Microbial Communities From Lake Erken, Sweden

Source Dataset Sampling Location

• Location Name: Lake Erken, Sweden
• Coordinates
  • Lat. (^o): 59.83763399
  • Long. (^o): 18.6203826
  • Depth (m): 14 to 20

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001280	Metagenome / Metatranscriptome	732	Y
F006846	Metagenome / Metatranscriptome	363	Y
F026561	Metagenome / Metatranscriptome	197	Y
F028166	Metagenome / Metatranscriptome	192	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0211726_109288462	F028166	AGGAG	MTDGINLTGFNELKPAGTNNLDLNPTGQAPDSAFPATDKSTQDGSGLGNGGK
Ga0211726_109288463	F001280	GGCGG	MCIECGCESLGSETGIVPVTVTDVSRDGESGLTFEMTSTPEQTRQFINE
Ga0211726_109288464	F026561	N/A	MSNFTKDDGTGMTPPPAAGSASGAVTSRDATRKHPKQGGIKPRMKIDVNSHGIRRETSLDPKPKKTRPKKV
Ga0211726_109288466	F006846	GAG	MRPKRLREAIEAVVHENDELLRILSEYKEEEPTNLTWSEGDRWYGWTYNNNAKRYYFDDIGNESLMGLWEDQWAREEAEAK