Scaffold Ga0211726_10764546

Overview

Basic Information

• Taxon OID: 3300020161
• Scaffold ID: Ga0211726_10764546
• Source Dataset Name: Freshwater lake microbial communities from Lake Erken, Sweden - P4710_101 megahit1
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: SciLifeLab
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 726
• Total Scaffold Genes: 3
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Lake Microbial Communities From Lake Erken, Sweden

Source Dataset Sampling Location

• Location Name: Lake Erken, Sweden
• Coordinates
  • Lat. (^o): 59.83763399
  • Long. (^o): 18.6203826
  • Depth (m): 14 to 20

Associated Families

Family	Category	Number of Sequences	3D Structure?
F029433	Metagenome	188	Y
F042891	Metagenome / Metatranscriptome	157	Y
F048984	Metagenome	147	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0211726_107645461	F042891	AGGA	MATSVYLSNPKVTINSVDLQDQCTSATVNYVLEQLETTAFGDTARKYGAST
Ga0211726_107645462	F029433	GAG	MDYEVTSNRLNGYNWGDIIREADLGDLTTDLAFLVDSGHLSPLKPKKSAKTINTEQKD
Ga0211726_107645463	F048984	N/A	MAAQTYSDLFNTSINTLATTLNAVSGLVCVTDPRSVQPPCILLDAMSFTAYNSNIVDMSIPVTVISLGPSNADAYRNALNIAAKVLAAKVAVTDGRPTTLTIGGVDYPALSLNIQMKASA