NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0211726_10734211

Scaffold Ga0211726_10734211


Overview

Basic Information
Taxon OID3300020161 Open in IMG/M
Scaffold IDGa0211726_10734211 Open in IMG/M
Source Dataset NameFreshwater lake microbial communities from Lake Erken, Sweden - P4710_101 megahit1
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterSciLifeLab
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)9392
Total Scaffold Genes13 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)9 (69.23%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Lake Microbial Communities From Lake Erken, Sweden

Source Dataset Sampling Location
Location NameLake Erken, Sweden
CoordinatesLat. (o)59.83763399Long. (o)18.6203826Alt. (m)Depth (m)14 to 20
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F045090Metagenome153N
F061849Metagenome131Y
F064720Metagenome / Metatranscriptome128Y

Sequences

Protein IDFamilyRBSSequence
Ga0211726_1073421111F045090AGGAMNYDLCDLLNRKMENANGYLQANFPNRSVFKNQNIIDEFFEALSPDDYLEAMGSETCDHQCFAFWIYRNGKISDQLDDYDKSARRITRELANLSYSNSPALDVMYFSGCMKVIIAKNKAMYLETCIRPSLDQMFAIKDFELKHLKDSGKVMWRIVERKKKLNFYEGMGVNDLHDFKWSRI
Ga0211726_107342113F064720AGGVENKFLKLRLTKGQILTVSAILVALTSVSYQLYLMRKKNKNKEMGEAYLVYPEE
Ga0211726_107342118F061849GGAGMSVINGLYYQHLRSSVGFTATGSLFYATLPWHPQSTIDEIRITNTAGTAFTITNLVIVNSGAHYRNSSTDGKGHIIYRDPTDKNATANEGFWASYSFNTAIFHENLYDRPYLSVLINLSESKTNYPLRITATGKKAAPSSYLKADAQGIESLNDYRVLIGKSQTGTGGTAGTIYDVTGLAKGTGGENASQFNLNATNDYVYIGSRKKIDHWEFQVGIGLTAPANLQGQLWNGTAWSTFTAIDDTSTGNSDTFKFSGIVEGSGLATSTWVPVKADYSANTLLPEDPLTVQQNRIIAGGYPIVVLPPNPERYWVRFNLSAVATGGIVTFNKILPVSETYEQF

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