Scaffold Ga0211726_10734211

Overview

Basic Information

• Taxon OID: 3300020161
• Scaffold ID: Ga0211726_10734211
• Source Dataset Name: Freshwater lake microbial communities from Lake Erken, Sweden - P4710_101 megahit1
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: SciLifeLab
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 9392
• Total Scaffold Genes: 13
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 9 (69.23%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Lake Microbial Communities From Lake Erken, Sweden

Source Dataset Sampling Location

• Location Name: Lake Erken, Sweden
• Coordinates
  • Lat. (^o): 59.83763399
  • Long. (^o): 18.6203826
  • Depth (m): 14 to 20

Associated Families

Family	Category	Number of Sequences	3D Structure?
F045090	Metagenome	153	N
F061849	Metagenome	131	Y
F064720	Metagenome / Metatranscriptome	128	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0211726_1073421111	F045090	AGGA	MNYDLCDLLNRKMENANGYLQANFPNRSVFKNQNIIDEFFEALSPDDYLEAMGSETCDHQCFAFWIYRNGKISDQLDDYDKSARRITRELANLSYSNSPALDVMYFSGCMKVIIAKNKAMYLETCIRPSLDQMFAIKDFELKHLKDSGKVMWRIVERKKKLNFYEGMGVNDLHDFKWSRI
Ga0211726_107342113	F064720	AGG	VENKFLKLRLTKGQILTVSAILVALTSVSYQLYLMRKKNKNKEMGEAYLVYPEE
Ga0211726_107342118	F061849	GGAG	MSVINGLYYQHLRSSVGFTATGSLFYATLPWHPQSTIDEIRITNTAGTAFTITNLVIVNSGAHYRNSSTDGKGHIIYRDPTDKNATANEGFWASYSFNTAIFHENLYDRPYLSVLINLSESKTNYPLRITATGKKAAPSSYLKADAQGIESLNDYRVLIGKSQTGTGGTAGTIYDVTGLAKGTGGENASQFNLNATNDYVYIGSRKKIDHWEFQVGIGLTAPANLQGQLWNGTAWSTFTAIDDTSTGNSDTFKFSGIVEGSGLATSTWVPVKADYSANTLLPEDPLTVQQNRIIAGGYPIVVLPPNPERYWVRFNLSAVATGGIVTFNKILPVSETYEQF