Scaffold Ga0211726

Basic Information
Taxon OID	3300020161 Open in IMG/M
Scaffold ID	Ga0211726_10723522 Open in IMG/M
Source Dataset Name	Freshwater lake microbial communities from Lake Erken, Sweden - P4710_101 megahit1
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	SciLifeLab
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300020161 Open in IMG/M

Scaffold ID

Ga0211726_10723522 Open in IMG/M

Source Dataset Name

Freshwater lake microbial communities from Lake Erken, Sweden - P4710_101 megahit1

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

SciLifeLab

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	30053
Total Scaffold Genes	61 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	54 (88.52%)
Novel Protein Genes	5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	4 (80.00%)
Associated Families	5

Scaffold Components

Scaffold Length (bps)

30053

Total Scaffold Genes

61 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

54 (88.52%)

Novel Protein Genes

5 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

4 (80.00%)

Associated Families

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → unclassified Caudoviricetes → Freshwater phage uvFW-CGR-AMD-COM-C403	(Source: UniRef50)

Taxonomy

All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → unclassified Caudoviricetes → Freshwater phage uvFW-CGR-AMD-COM-C403

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Lake Microbial Communities From Lake Erken, Sweden

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Lake Microbial Communities From Lake Erken, Sweden

Source Dataset Sampling Location
Location Name	Lake Erken, Sweden
Coordinates	Lat. (^o)	59.83763399	Long. (^o)	18.6203826	Alt. (m)	Depth (m)	14 to 20
Location on Map

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Source Dataset Sampling Location

Location Name

Lake Erken, Sweden

Coordinates

Lat. (^o)

59.83763399

Long. (^o)

18.6203826

Alt. (m)

Depth (m)

14 to 20

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F020883	Metagenome	221	Y
F029734	Metagenome / Metatranscriptome	187	N
F053803	Metagenome	140	N
F064418	Metagenome / Metatranscriptome	128	N
F095175	Metagenome / Metatranscriptome	105	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0211726_1072352223	F053803	AGGA	MDIELTEDEIMDSLRFIHRVRKNKKEFDVTDRKFDKNNSSYSVNLMGRLGEVAAARILGLSTDDSVTPSGDNGHDLQTVLGKSIQVKTSTLPQLIFNAPELFVSDIGVLVKFSGDKQLPHVDSLFNVIGWTTRENFLANHYLHDYGYGTRLVMDANQLQPIEVLIDEISRLH
Ga0211726_1072352228	F095175	GGA	MTTIIGIQKYDHCVIAADSRTTTEKGRPYSHPIITKITKRGKYLIAGAGTTMPCDTIQHIWKPPALPPSVKDPYHFMITDIVPSMRECLKDNGWVADEKSDDYEFLFLIAVNGTIYEIDDTFSVFLRDDGVYGIGSGSSYAVGAIQQGATWRKALQIAAKNDVYTAPPFLMHRQEKK
Ga0211726_1072352238	F064418	N/A	MHKGLLLSKPRPTEIKLVAKLLDPDADNSEDATALAIEIIEALDKSRTKRESFIVVAKLADWVPVQAWGEFNTRLQAEKFFPNLSSPDTGGKGSIVRLENPDDLLKRIGAIK
Ga0211726_1072352248	F020883	AGGAG	MEASFMITQVDTTLSNYTNQYRRLGMQDLAIWQAVCQYYAQPQAHEIKITTHLSKEEAFDQMVKDNWFVDMGDHFYGLDYETTDEMVLEYLIDNKYAERME
Ga0211726_1072352258	F029734	AGGA	MRTVGTKTLVGVVKNGVVHVSQADSKRIFAKVRITTNTAKSSKKIEAILSAFQAYPNFTLVASEIAKVEPKAYLTLKGSVA

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0211726_10723522

Overview

Ecosystem & Geography

Associated Families

Sequences