Scaffold Ga0211726_10710873

Overview

Basic Information

• Taxon OID: 3300020161
• Scaffold ID: Ga0211726_10710873
• Source Dataset Name: Freshwater lake microbial communities from Lake Erken, Sweden - P4710_101 megahit1
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: SciLifeLab
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 7220
• Total Scaffold Genes: 18
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 10 (55.56%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (25.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Lake Microbial Communities From Lake Erken, Sweden

Source Dataset Sampling Location

• Location Name: Lake Erken, Sweden
• Coordinates
  • Lat. (^o): 59.83763399
  • Long. (^o): 18.6203826
  • Depth (m): 14 to 20

Associated Families

Family	Category	Number of Sequences	3D Structure?
F013885	Metagenome / Metatranscriptome	267	Y
F020539	Metagenome / Metatranscriptome	223	Y
F024771	Metagenome	204	N
F032656	Metagenome / Metatranscriptome	179	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0211726_1071087314	F032656	N/A	MNFYLITYAINFVKVNDESVKEDVAHVRFFDSQNFANSHSFLASLKQVKKLRITSVEWDLEECSWYDYYEDISNTIH
Ga0211726_1071087315	F024771	N/A	MNDKKYIENFNHESYENRTKNYLNISEDRFVQYCTSRGYLFRKLGLNAVTDSQSFAESVIPLFAKLPTLIKAFPDYFVYSPKKSDTNQSDQKTQFFVELKNATWEQGKTLAKIKVRDLKRYIYFEQSFTNYHTRFTICFPLADKIIFKSVDQILKLLPKSQLKCFPNDNIEYFEVQLN
Ga0211726_107108735	F013885	GGAG	MLNYSDFKNYFTKFYADAFEDAKSFWKNYADTVEKFYKK
Ga0211726_107108736	F020539	N/A	MARTHNEQIIAFKGHLTGVKREIRILATSVYKLEKKLETLFWSILCGLGALSLALVTIFLAK