Scaffold Ga0211726

Basic Information
Taxon OID	3300020161 Open in IMG/M
Scaffold ID	Ga0211726_10703132 Open in IMG/M
Source Dataset Name	Freshwater lake microbial communities from Lake Erken, Sweden - P4710_101 megahit1
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	SciLifeLab
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300020161 Open in IMG/M

Scaffold ID

Ga0211726_10703132 Open in IMG/M

Source Dataset Name

Freshwater lake microbial communities from Lake Erken, Sweden - P4710_101 megahit1

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

SciLifeLab

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	16433
Total Scaffold Genes	44 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	5 (11.36%)
Novel Protein Genes	6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (33.33%)
Associated Families	6

Scaffold Components

Scaffold Length (bps)

16433

Total Scaffold Genes

44 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

5 (11.36%)

Novel Protein Genes

6 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

2 (33.33%)

Associated Families

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	(Source: UniRef50)

Taxonomy

All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Lake Microbial Communities From Lake Erken, Sweden

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Lake Microbial Communities From Lake Erken, Sweden

Source Dataset Sampling Location
Location Name	Lake Erken, Sweden
Coordinates	Lat. (^o)	59.83763399	Long. (^o)	18.6203826	Alt. (m)	Depth (m)	14 to 20
Location on Map

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Source Dataset Sampling Location

Location Name

Lake Erken, Sweden

Coordinates

Lat. (^o)

59.83763399

Long. (^o)

18.6203826

Alt. (m)

Depth (m)

14 to 20

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F032541	Metagenome / Metatranscriptome	179	Y
F053885	Metagenome / Metatranscriptome	140	Y
F061656	Metagenome / Metatranscriptome	131	Y
F061834	Metagenome / Metatranscriptome	131	Y
F080894	Metagenome / Metatranscriptome	114	Y
F097317	Metagenome / Metatranscriptome	104	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0211726_107031323	F080894	AGGA	MAERDLRGTWKAKPKRVAKSPPVIIGMIYEGVDKFFGNKVVGMLVEMFDQNDEAVLRTKQNKLTSVDKKSLKIVASD
Ga0211726_1070313231	F053885	N/A	MDGKVKTPKELMADLNGNYIQVIKKNGKTHDKLYKDPQRAIRGVGGVDNVKYLREVLKEQVNAKYVEEDSLTGTLENEL
Ga0211726_107031324	F097317	N/A	MEKFFEAQFKMLDRGLVATPNTRKDLEAFAKSNQGSMDIVLMQMAINFGYKIALENVQEELQKSSNKTKVRGTIEL
Ga0211726_1070313241	F061834	GAG	MVHKKELRKVLNNYLKGSISIKEKDMAREVIEKKLFIENIILLKEIEDRRDFMEEEIGVDMSIYEEKFLQVIENLFKIHFNKEQFALIQYYLYQVPTIVDWDGKIDITDGKEMITVDFETPEQVWNVITSLKIK
Ga0211726_1070313242	F061656	N/A	MPQFCFYSKNNPTQEPVGVIHAASREEAVKFFSLSKQLSTNDFLTIFEVKSYTYGAQEGIAESTKQLLKG
Ga0211726_1070313243	F032541	N/A	MNLINEIREMLSEVTKVNFKGNKFVLKIDVNEDPNKKGIKIQFLPTTFAGMSKQQQDDIAIDLAAKLNQGLAPLGLTVERDRELKDKTILGFFVYIEYLDKIIINALSQAAKEPDTNN

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0211726_10703132

Overview

Ecosystem & Geography

Associated Families

Sequences