Scaffold Ga0211726_10626183

Overview

Basic Information

• Taxon OID: 3300020161
• Scaffold ID: Ga0211726_10626183
• Source Dataset Name: Freshwater lake microbial communities from Lake Erken, Sweden - P4710_101 megahit1
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: SciLifeLab
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1813
• Total Scaffold Genes: 6
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (83.33%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Lake Microbial Communities From Lake Erken, Sweden

Source Dataset Sampling Location

• Location Name: Lake Erken, Sweden
• Coordinates
  • Lat. (^o): 59.83763399
  • Long. (^o): 18.6203826
  • Depth (m): 14 to 20

Associated Families

Family	Category	Number of Sequences	3D Structure?
F014135	Metagenome / Metatranscriptome	265	Y
F019602	Metagenome / Metatranscriptome	228	N
F043225	Metagenome / Metatranscriptome	156	Y
F100405	Metagenome / Metatranscriptome	102	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0211726_106261832	F014135	GAGG	MSRGLMLDYDIADKITLLTMQDQLKYLRKELEDFKEGKWLHPEDVVKNAEIIAALELLIPYYGGTP
Ga0211726_106261833	F043225	AGGA	MNIDLINAELQDVALTQQQEEIDLTYQDFLDTMNAYHDMMMYSSNSYDEDAIFYGVN
Ga0211726_106261835	F100405	AGGA	MTKSVQQYTKIFEVLQAANAPVSVSTIRAIDGIVATRLSTYLWEIKKNTGFAVRSNRDGRTVVSYELVGAGTAPVAKPAKVKAVKTAKAPVVKAAKPVKAKKVTPVTMPSGDSLDGIMNAMAKSSAKKPVNLLDEIDTDVEDFEDRAFAEAYIRT
Ga0211726_106261836	F019602	GGA	MDDRAVIERYILQAWDLGLTGTEVVTYVQYMSSIPSFEIEPVLQNLIARMSE