NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0211726_10626183

Scaffold Ga0211726_10626183


Overview

Basic Information
Taxon OID3300020161 Open in IMG/M
Scaffold IDGa0211726_10626183 Open in IMG/M
Source Dataset NameFreshwater lake microbial communities from Lake Erken, Sweden - P4710_101 megahit1
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterSciLifeLab
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1813
Total Scaffold Genes6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)5 (83.33%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (100.00%)
Associated Families4

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Lake Microbial Communities From Lake Erken, Sweden

Source Dataset Sampling Location
Location NameLake Erken, Sweden
CoordinatesLat. (o)59.83763399Long. (o)18.6203826Alt. (m)Depth (m)14 to 20
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F014135Metagenome / Metatranscriptome265Y
F019602Metagenome / Metatranscriptome228N
F043225Metagenome / Metatranscriptome156Y
F100405Metagenome / Metatranscriptome102N

Sequences

Protein IDFamilyRBSSequence
Ga0211726_106261832F014135GAGGMSRGLMLDYDIADKITLLTMQDQLKYLRKELEDFKEGKWLHPEDVVKNAEIIAALELLIPYYGGTP
Ga0211726_106261833F043225AGGAMNIDLINAELQDVALTQQQEEIDLTYQDFLDTMNAYHDMMMYSSNSYDEDAIFYGVN
Ga0211726_106261835F100405AGGAMTKSVQQYTKIFEVLQAANAPVSVSTIRAIDGIVATRLSTYLWEIKKNTGFAVRSNRDGRTVVSYELVGAGTAPVAKPAKVKAVKTAKAPVVKAAKPVKAKKVTPVTMPSGDSLDGIMNAMAKSSAKKPVNLLDEIDTDVEDFEDRAFAEAYIRT
Ga0211726_106261836F019602GGAMDDRAVIERYILQAWDLGLTGTEVVTYVQYMSSIPSFEIEPVLQNLIARMSE

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