Scaffold Ga0211726_10602991

Overview

Basic Information

• Taxon OID: 3300020161
• Scaffold ID: Ga0211726_10602991
• Source Dataset Name: Freshwater lake microbial communities from Lake Erken, Sweden - P4710_101 megahit1
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: SciLifeLab
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 9066
• Total Scaffold Genes: 25
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 17 (68.00%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (60.00%)
• Associated Families: 5

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Lake Microbial Communities From Lake Erken, Sweden

Source Dataset Sampling Location

• Location Name: Lake Erken, Sweden
• Coordinates
  • Lat. (^o): 59.83763399
  • Long. (^o): 18.6203826
  • Depth (m): 14 to 20

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001354	Metagenome / Metatranscriptome	716	Y
F050225	Metagenome	145	N
F072117	Metagenome	121	N
F077041	Metagenome	117	N
F085148	Metagenome	111	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0211726_1060299111	F085148	N/A	MSSYKQKIEYLAQSYIAIAKRTRNWDRVKELIECNKDTEESVKQRIKELLRKK
Ga0211726_1060299115	F072117	AGGAG	MSEIESQTNDLLQLQGELERIFTVLEGGIDLSKEQIDLLRYGCGFAPVNRQRDFLQGVFNDLNPYGRTQ
Ga0211726_1060299121	F050225	AGGAG	MLKSEKDAELFYKAQRKFTDRQRMLDKGWGDLEAYKRLREAEKKKERIESIRMFFWGGVAAVLFCVVFFGTNYLMHGYAI
Ga0211726_1060299125	F001354	N/A	KTTDATVVTIFKVNPLFGTRVQYRAYTKTGRDKTNDGLDVGLFTSNQSNNQDVVALMAGDIPCGSYKAAQSEIGLWYIEKGMTFGCRISVPPDPSRFIGQITVGWDNPPAELEQAKAMLFIAATMLSRSKK
Ga0211726_106029918	F077041	AGGA	MIVLCDEFAVLKKLIRMYDDALKVNNPIQMMEIAVDIAESAEKLEQHSVDHANLSE