Scaffold Ga0211726_10587064

Overview

Basic Information

• Taxon OID: 3300020161
• Scaffold ID: Ga0211726_10587064
• Source Dataset Name: Freshwater lake microbial communities from Lake Erken, Sweden - P4710_101 megahit1
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: SciLifeLab
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4399
• Total Scaffold Genes: 11
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (27.27%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (20.00%)
• Associated Families: 5

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Lake Microbial Communities From Lake Erken, Sweden

Source Dataset Sampling Location

• Location Name: Lake Erken, Sweden
• Coordinates
  • Lat. (^o): 59.83763399
  • Long. (^o): 18.6203826
  • Depth (m): 14 to 20

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001754	Metagenome / Metatranscriptome	641	Y
F009073	Metagenome / Metatranscriptome	323	Y
F009333	Metagenome / Metatranscriptome	319	Y
F042337	Metagenome	158	Y
F048784	Metagenome	147	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0211726_105870641	F042337	AGG	MELVIEGLDKLILYTYVQRKISDIRVDNKGVSRDASYVFTFPPIDSEIDGWRNKMEVYLCKFPTSNGVYELFVMGLHGVTCSYLDLKQIRDIDIFQCHFIST
Ga0211726_1058706410	F048784	N/A	MNTNEMNEKLVSVFSQDELAALMTAVAGYVNVKRKQGRSTGIECVVFNKVTDALLLSNYLNAVEVDVKPGRVGVAEYKMAEAMEMA
Ga0211726_1058706411	F001754	N/A	MSTISNPFKNFAASKLSNNPKFEVLVSYTDFLGTKHNIVCKTRKKLVEANQFLKMFKTESVSINKILGEYPVVMGEYPKKYHSEIKRELAAAGFSTVSNFLIK
Ga0211726_105870646	F009333	N/A	MSYVRFNRHQTFNREMMTYHSDTLRAVEDFYMDQNESWFNDVYNMLCGVWDGYLYTDLLESAKQLGLPTHITNRIEYTINFIQK
Ga0211726_105870648	F009073	N/A	MKNYQIILTSVLSFGVAISILNGTAQQYVTFAGELNELGCTTIALTMGVLSLYALDWKGFFQYLIK