Scaffold Ga0211726_10517418

Overview

Basic Information

• Taxon OID: 3300020161
• Scaffold ID: Ga0211726_10517418
• Source Dataset Name: Freshwater lake microbial communities from Lake Erken, Sweden - P4710_101 megahit1
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: SciLifeLab
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4182
• Total Scaffold Genes: 10
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 7 (70.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Lake Microbial Communities From Lake Erken, Sweden

Source Dataset Sampling Location

• Location Name: Lake Erken, Sweden
• Coordinates
  • Lat. (^o): 59.83763399
  • Long. (^o): 18.6203826
  • Depth (m): 14 to 20

Associated Families

Family	Category	Number of Sequences	3D Structure?
F004475	Metagenome / Metatranscriptome	436	Y
F011077	Metagenome / Metatranscriptome	295	Y
F017788	Metagenome / Metatranscriptome	238	Y
F020851	Metagenome / Metatranscriptome	221	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0211726_105174182	F011077	GAGG	MDTNLTWAEEDVNLWKGWTYSPEKNRYYFNDIGNESLAAFWADEFLNQAYE
Ga0211726_105174183	F020851	AGG	MSEDIVDLAISMAEIDTGMQLPLEEREAMKQRILARIEEINE
Ga0211726_105174185	F017788	AGGA	MKKIIITSLLITLLIPSASAEAATKSLNTKGNKASCKNIKTQYQSEMMSKWSNGLISDQDLLKEIDLNIDMLTTKQKITTGKIKTTIASWIKAEKDTKNALSDKDVKGITAAMNLKISSITNFDKLCKGIEK
Ga0211726_105174189	F004475	GGA	MTNWTEELNDKQKEDVWNFVVFTVKEIREQIAKDIEATIPLWKLNGLLKSRRTQKAFEASAAIARGQNEVQFKK