Scaffold Ga0211726_10453870

Overview

Basic Information

• Taxon OID: 3300020161
• Scaffold ID: Ga0211726_10453870
• Source Dataset Name: Freshwater lake microbial communities from Lake Erken, Sweden - P4710_101 megahit1
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: SciLifeLab
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1268
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (60.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Lake Microbial Communities From Lake Erken, Sweden

Source Dataset Sampling Location

• Location Name: Lake Erken, Sweden
• Coordinates
  • Lat. (^o): 59.83763399
  • Long. (^o): 18.6203826
  • Depth (m): 14 to 20

Associated Families

Family	Category	Number of Sequences	3D Structure?
F006587	Metagenome	369	Y
F012016	Metagenome	284	Y
F033405	Metagenome	177	Y
F066489	Metagenome	126	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0211726_104538701	F012016	AGGAGG	MQETLKSGLPKQPYAWSTEEFNINGELVWSSITQFRPKELSWIRDLPTKKHYITITPLYKCEEKAEKITGVKSYRESTQRLTDAYNGL
Ga0211726_104538702	F066489	N/A	MLIMAFNLGCVTVATSVATQVGVQTVGEQYLISQNKPVIKCNVINVIKGNKACRVSKTYLIRRA
Ga0211726_104538703	F006587	AGGAGG	MSEEYKGTGFVLVGLIVGCCITWGVMKYNNTQTKYKMNLKCIQGELYEEIRPNFYVKSHLECFEQRTLQP
Ga0211726_104538705	F033405	AGTAGG	VFVLMNSKVKTDEQLIEEVNQYMEKYPNATRNQIVLHATGSATRVRELNKRGLIKLPKALPKGANTNWNGYFNKASETNPSRKGM