Scaffold Ga0211726_10369700

Overview

Basic Information

• Taxon OID: 3300020161
• Scaffold ID: Ga0211726_10369700
• Source Dataset Name: Freshwater lake microbial communities from Lake Erken, Sweden - P4710_101 megahit1
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: SciLifeLab
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 5409
• Total Scaffold Genes: 14
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Lake Microbial Communities From Lake Erken, Sweden

Source Dataset Sampling Location

• Location Name: Lake Erken, Sweden
• Coordinates
  • Lat. (^o): 59.83763399
  • Long. (^o): 18.6203826
  • Depth (m): 14 to 20

Associated Families

Family	Category	Number of Sequences	3D Structure?
F005630	Metagenome / Metatranscriptome	394	N
F006303	Metagenome / Metatranscriptome	376	Y
F036701	Metagenome / Metatranscriptome	169	Y
F056338	Metagenome / Metatranscriptome	137	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0211726_1036970012	F005630	N/A	MANLYEVNGFYGTRNRGTILVYETYSGKRWYCVEGSCNINCTYDEINEGCNVERLSDVDTMSSRDGINSARELRDFVIS
Ga0211726_1036970013	F056338	N/A	MNYYYDCEVFGDRYDEMQELIKESNIIDTMLDGRTRTIAELEKDFPMLNICDVMDWIYSSFAPGKESWEMDYEWETQHLMTFCRNFNVYLYEKPRESFFKWEGIEEAERGGYKGVVFSDL
Ga0211726_103697003	F006303	N/A	MLHWLADKIIPKYKPNEKEKLILDVVNNLCQHVDTEILMAPVSGRYYLINKKLEYWIRIYDNGITITNHKFTFSNTSPQMFQDMIIELVVNAIEKSRDEFEAAVFQNELELLENIAASIKHK
Ga0211726_103697009	F036701	N/A	MDGLTILLFWILLSFPIVRHVNKKMEQLDDELRFKTSFQLVLFIRAQFEVPKWYFIQLTKLLSK