Scaffold Ga0211726_10360034

Overview

Basic Information

• Taxon OID: 3300020161
• Scaffold ID: Ga0211726_10360034
• Source Dataset Name: Freshwater lake microbial communities from Lake Erken, Sweden - P4710_101 megahit1
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: SciLifeLab
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 23074
• Total Scaffold Genes: 46
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 8 (17.39%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (25.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Lake Microbial Communities From Lake Erken, Sweden

Source Dataset Sampling Location

• Location Name: Lake Erken, Sweden
• Coordinates
  • Lat. (^o): 59.83763399
  • Long. (^o): 18.6203826
  • Depth (m): 14 to 20

Associated Families

Family	Category	Number of Sequences	3D Structure?
F056336	Metagenome	137	Y
F088364	Metagenome	109	Y
F094908	Metagenome	105	N
F096897	Metagenome	104	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0211726_1036003410	F088364	N/A	MWVLNIIEQCRPKNFQVHQMLRHDGDELIPVEEFKPGECGHVDYYFGGQIYTHIGHWPIQNIVPRFSVPVHSAIFINDEDQKPTVCTEIVRRHAGPTQSPVSFDVYAPRPHFTVSFAGGLKFSFGIKWVLIKKVSGKVFIQNVLGQMTTQPLAPGKT
Ga0211726_1036003415	F056336	N/A	MLQYWIDRVRVTGGPSDVTVVPVSFVTTEIVDQLKRIVAPEDEIVDGEEAAKNDWVFELKPGDVFPVQIIASIQATLDASKFDGMMFPVVYRGSPMMEKRFYKRSGGENFQKSNMPIFNLNPPPVVSEV
Ga0211726_1036003417	F094908	AGGA	MEQLKTNWDTVMNNPVFRRKFTGCQGDYDISTCRRIIHPKGTLYTPVSDEEGHFMAYEFIGSKIIRVFDPAHPKNRYSGHLDSALISKLSGRRVVVCRDHPQKHEEDTFCATWTLAWLRPDMRHLTISSSQSK
Ga0211726_1036003438	F096897	N/A	MVFFYNLFKNVGVFYTMSHLSVEQTSDASHLMEFSIIDGELAIIHDGEVEYVFERDSLSRAAYTYMINWIQGKKSPKDDPGTVWFEAENAWDSLSPEIQGTLIAIAHKERQQARDIRDGLLATLHEYKGLKSIKDAYANSISACFGYLH