Scaffold Ga0211726_10334208

Overview

Basic Information

• Taxon OID: 3300020161
• Scaffold ID: Ga0211726_10334208
• Source Dataset Name: Freshwater lake microbial communities from Lake Erken, Sweden - P4710_101 megahit1
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: SciLifeLab
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 5819
• Total Scaffold Genes: 17
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 13 (76.47%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Kyanoviridae (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Lake Microbial Communities From Lake Erken, Sweden

Source Dataset Sampling Location

• Location Name: Lake Erken, Sweden
• Coordinates
  • Lat. (^o): 59.83763399
  • Long. (^o): 18.6203826
  • Depth (m): 14 to 20

Associated Families

Family	Category	Number of Sequences	3D Structure?
F004546	Metagenome / Metatranscriptome	433	Y
F056606	Metagenome / Metatranscriptome	137	Y
F102562	Metagenome / Metatranscriptome	101	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0211726_103342081	F056606	N/A	VNATLELTLRPQSEDRKKVVACVIREVADRLCTDWGELQHPVDVLREIADEVEAL
Ga0211726_103342085	F102562	GAG	MTDEEFLKQTATKVANILHMPLGDIEPIKLIQMVVSLDILLGGDKELMIHWVNTHNKHLGYCPGAHLTDARMDDTIRYLDAMVEH
Ga0211726_103342089	F004546	GGAG	MNYEEEYPFNEFPWKLVHKDGKETRKCYFQSEDHMKKHIVRYNLKKKDYTIGYKYEND