Scaffold Ga0211726_10333205

Overview

Basic Information

• Taxon OID: 3300020161
• Scaffold ID: Ga0211726_10333205
• Source Dataset Name: Freshwater lake microbial communities from Lake Erken, Sweden - P4710_101 megahit1
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: SciLifeLab
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 14453
• Total Scaffold Genes: 34
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 8 (23.53%)
• Novel Protein Genes: 8
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (37.50%)
• Associated Families: 8

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Lake Microbial Communities From Lake Erken, Sweden

Source Dataset Sampling Location

• Location Name: Lake Erken, Sweden
• Coordinates
  • Lat. (^o): 59.83763399
  • Long. (^o): 18.6203826
  • Depth (m): 14 to 20

Associated Families

Family	Category	Number of Sequences	3D Structure?
F011074	Metagenome	295	N
F019816	Metagenome	227	Y
F020348	Metagenome	224	N
F020651	Metagenome / Metatranscriptome	222	Y
F025481	Metagenome	201	Y
F032653	Metagenome	179	N
F033030	Metagenome / Metatranscriptome	178	N
F048948	Metagenome	147	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0211726_1033320513	F019816	N/A	MKELLPFERQMLLAEVYHYAWYNEEAYKDLLTFIEKYSTIIDKPVFFNPINNNDTTTTNLEPLAYGQDLDTNPSFNEV
Ga0211726_1033320514	F033030	N/A	MTEKKWSAGAWKKTTAKGEVINFTINDVRYSMWVNAYKTEDKQPDYKIYVNDFKPKEDTEGLPF
Ga0211726_1033320517	F011074	N/A	MQLVGLNVMPDKIKMSVLEDWIRSEYGNFTINEIKVAFKQMVANDFIDHYQNFSPAYFSQVMDRYKKKANEIRKMIPQEREEAIPHLTDLEIIDYSYQEYKLLENRTFDRVFNPLSVFTKLNATGIKKWTKEDGALAKKKLMEIITYKANRMDIISAKQYRDEWTDSWLKNQARAVAVALFFDSEIANNKITYK
Ga0211726_1033320522	F020348	GGA	MEIEHRQYLDLHRPNYEMVQNGYVRNIDLDILKMYEHIYRKYMNDTFILTVWCSHCIFDMIKRLYEWYDLQPKPKNKKNG
Ga0211726_1033320524	F020651	AGG	MKVAILLLAQNRHDLTQRVINQNFFNSGYDADCFLIDNGSDTHETFNYPFAGYDLSKEKRGIAAGVNAGLRMSENYDAVCLLANDILLPENWLSKWVMFSQRVSKTGIIGIHCVEELPPIVDGVHKTHTPFGDNFITRELIDKVGGYNEDYDPYGMQDRDYGERATITGFTNYYLPDMRSEHIGHDVGNGTDYRKMKDESLARAQSVWDKYQDIYHNQNKIRCEF
Ga0211726_103332053	F032653	N/A	MRLILLALLLTSCASVKKFEKRYDSTGTTKVDSVHLTFYDSVTKIIEKEQVFTKTITIFDTIRVSKDSIIVVPKVVTKWVYEIKDKETNNKLVKKDTIAFNRTETAQISIADKSKVTTQNNFWKALIGLIIAIVLILAYWNRLWK
Ga0211726_1033320530	F048948	GAGG	MRKLWAIWYIITHKAYFVAVCKTGMNGDDMTTIGNYTYAMAETLINKHIADVDTYLDQEDAIDEANDIINGIL
Ga0211726_103332059	F025481	N/A	MTHLTTYQKFQYQRYGNILLQGDSSTQDPYNALLLPKNYDYEDDDYTFTRWVENQSELELLKNELYED