Scaffold Ga0211726_10139598

Overview

Basic Information

• Taxon OID: 3300020161
• Scaffold ID: Ga0211726_10139598
• Source Dataset Name: Freshwater lake microbial communities from Lake Erken, Sweden - P4710_101 megahit1
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: SciLifeLab
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 34727
• Total Scaffold Genes: 61
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 54 (88.52%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 5 (100.00%)
• Associated Families: 5

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Lake Microbial Communities From Lake Erken, Sweden

Source Dataset Sampling Location

• Location Name: Lake Erken, Sweden
• Coordinates
  • Lat. (^o): 59.83763399
  • Long. (^o): 18.6203826
  • Depth (m): 14 to 20

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002540	Metagenome / Metatranscriptome	550	Y
F015583	Metagenome / Metatranscriptome	253	Y
F020324	Metagenome	224	Y
F078203	Metagenome	116	Y
F083632	Metagenome	112	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0211726_1013959834	F020324	AGAAG	MPIATLRYKLPDEQAEYDAAINGRKAFVCLWEIDQKLRSLLKHGEPSDETARLAEEIRQMIRDECAEALES
Ga0211726_1013959839	F083632	GGA	MSLEDLDAAVWASLSARKHLAGKPLVSRLVRRVVRKWPAMSLSQARPESYGVMLEQVGHSIERSERQNVQMGIILSLLLGALIQEIVKAVLAWWMKSASHRISLVGWQLEMRKR
Ga0211726_1013959844	F002540	AGGAGG	MTLPNYTGTADEYAKYGNTLSIWQQLALLQAWAPLIGYGQRFVNEADPYRRGLVVSDAAEWLASKTSSQADDQLVRLLADVLKTPQGEALVRWCLLQAEGAK
Ga0211726_101395985	F078203	AGGAG	MTDRRVPYSEDEAQEAWLWVGRHGPANSWTATNGTAARMIGRLLEERERLLAMLASRENIQRPAEQ
Ga0211726_1013959851	F015583	AGGAG	MRFAFVVLFALTASLVHGQTVVVRGPAVISAQDHATIIARRGALVHSQCSQTEGIGMGSTPEAARRNCCFFGKKQIVEEGVAYSPVTRRWYAVIRYR