Scaffold Ga0211726_10133432

Overview

Basic Information

• Taxon OID: 3300020161
• Scaffold ID: Ga0211726_10133432
• Source Dataset Name: Freshwater lake microbial communities from Lake Erken, Sweden - P4710_101 megahit1
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: SciLifeLab
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2470
• Total Scaffold Genes: 7
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (71.43%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Lake Microbial Communities From Lake Erken, Sweden

Source Dataset Sampling Location

• Location Name: Lake Erken, Sweden
• Coordinates
  • Lat. (^o): 59.83763399
  • Long. (^o): 18.6203826
  • Depth (m): 14 to 20

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000441	Metagenome / Metatranscriptome	1136	Y
F001019	Metagenome / Metatranscriptome	804	Y
F003603	Metagenome / Metatranscriptome	477	Y
F034924	Metagenome / Metatranscriptome	173	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0211726_101334322	F000441	AGGAGG	MQQTDHYINTQLSKAQALLWSGSLHEVDEAHNIISNLIQDRMGKAEGTNV
Ga0211726_101334323	F001019	GAGG	MSDYVPSLEILEVNYSCSPGGIDMFEVYDKSDIPLDIPIYETESLTEAVLFCYNLGKDFTVRTYAEWEERESAYASV
Ga0211726_101334324	F034924	GAG	MPLYRVFGTKYTNYYTIVSATDEYQAAELANARPLNEWYELPTDDVVEATDVFLDEDTSEDLEYKL
Ga0211726_101334326	F003603	AGGCGG	MKTKEEQIGELLANSVEDHFFNPAALGRYLADQPTYTLDRVMEVVAWIIEKQARRYDREVETGGQVSEGLAIAHKLDMVIDKIKITNDLKNINLPITPKERAEFVKSLPPESSQNYRYSWLHETNNQSNTFANQGM