Scaffold Ga0211726_10056464

Overview

Basic Information

• Taxon OID: 3300020161
• Scaffold ID: Ga0211726_10056464
• Source Dataset Name: Freshwater lake microbial communities from Lake Erken, Sweden - P4710_101 megahit1
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: SciLifeLab
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4105
• Total Scaffold Genes: 9
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 7 (77.78%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Lake Microbial Communities From Lake Erken, Sweden

Source Dataset Sampling Location

• Location Name: Lake Erken, Sweden
• Coordinates
  • Lat. (^o): 59.83763399
  • Long. (^o): 18.6203826
  • Depth (m): 14 to 20

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000403	Metagenome / Metatranscriptome	1177	Y
F005697	Metagenome / Metatranscriptome	392	Y
F024931	Metagenome	204	N
F025683	Metagenome / Metatranscriptome	200	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0211726_100564641	F024931	AGAAGG	LHWLPMKMELTHDEQMVCMLAAVKLTAESTKGMDNPQRYQKSLATFEYLVESAEAIGSEWVVAKYFNLPFDPYENKFKVKADVGNAIEVRWTKYVAGQLIIHEYDRPNDIAVLVTGQAPHYFIAGWIPIAMAQRPKYRHSKQPNWWVTQINLQPIENLRKSNYGHSSI
Ga0211726_100564642	F000403	GAG	MEIINPQTMIGKLLKNGEVVEEYKMEQCDKCSILTRLDAFGYQKGFGNEKVIWFCIGCR
Ga0211726_100564643	F005697	AGGCGG	MGFLDNYEASRERLERWIKTYPTGRIETRIVEFSAEKGYVLVEAKAFRNDTDVNPAGIDYAYGYQGAYQQNMKRWFCEDTVTSAIMRVQQLVMGGAERSTKEIMEQVERTPAKIANTDSTDYWTTKFGDVPSYKSAAEAEQSGIPSFGSSVDAIAQQLGGELVKEAPQCSHGHMIWKQSHEGAPKAWGGYFCTERTKATQCTPRWYVMRSTGKWEPQA
Ga0211726_100564644	F025683	GGAG	MVLDLLDTATLGRLSMLVILLVMAAAVGYAKGFKDGKREGFARRKAISRHIANKAVK