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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300020160 Open in IMG/M |
| Scaffold ID | Ga0211733_11229804 Open in IMG/M |
| Source Dataset Name | Freshwater lake microbial communities from Lake Erken, Sweden - P4710_105 megahit1 |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | SciLifeLab |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 53961 |
| Total Scaffold Genes | 87 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 7 (8.05%) |
| Novel Protein Genes | 3 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 0 (0.00%) |
| Associated Families | 3 |
| Taxonomy | |
|---|---|
| Not Available | (Source: ) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Lake Microbial Communities From Lake Erken, Sweden |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | Lake Erken, Sweden | |||||||
| Coordinates | Lat. (o) | 59.83763399 | Long. (o) | 18.6203826 | Alt. (m) | Depth (m) | 0 to 10 | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F021773 | Metagenome / Metatranscriptome | 217 | Y |
| F026554 | Metagenome / Metatranscriptome | 197 | Y |
| F039135 | Metagenome | 164 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0211733_1122980456 | F039135 | N/A | MKYLKKYISFKESVLVDLSVQTMVDILESLTIWHDALLEAIGAEEVDMFDTFKLPLEDYKDKLDLDYLEDNVEFINSLSSIALKKSEVKLSDDFQTFLNKPCRFMFIYGIDKNELENPSYLIFQSWNETLNKWEDVKLYKINGDVQKFYDKLTSRTIELVDGDENYIYNVTNGNEWVLQNVEKENDIYKRTFRKEELQDLLKERKIKVNIL |
| Ga0211733_1122980457 | F021773 | N/A | MKWLRKFELFKESKAYSNKNLISEMCVSMLLINNTFLDNILDKGLKARYNENSQVFLTDLKNLIIAKNRFKLGKFEDKQCVEDNETSKINLAFEGIKFDIEKDWNYLVNARTIARNIIDKLLPEGKLESDNIKAVYWIGPNKDDEHEEDIVVELRDGQQFSFFLNKNLSASKSASFNTFAEDLIGQDLDLLFTEEYLVKWNKLTQEWIRILYDNANKDIQFHIEKFIDPKRIDSIGYFDYFDIRHGDLKYKHLGEFFKVFDKNILKFQDLLLEIWKNRDTCFMDPERVYQEWEEVKIVVLNSKILENLLTTSLKSNFPDDIKKLDDGFKLAEGTVKMKLFKTLVEKMGCLERPTYYLGQNGNIFNLIPERQFFRDNYDDLTIKFDYHVNFKVSEEEENNDFKIKINLLLDDEKLVDMDIVIRMTSEMSGRLTAKYKFDISSHFNYLVSLKRGVTQEDEEQEDDIQNDIEQ |
| Ga0211733_112298047 | F026554 | N/A | MAFYFIYKIMKLEINEVYHQYIVRVVIFALFTFKRQIRQPNVYKQSVYSFVEKRLPWKIHLMVDTGEKLSKEDERDLILEELLNDKKVDFLKYVCVIFTTPLKQDCMMEIDLTDEKKYEHYLYS |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |