Scaffold Ga0211733_11184400

Overview

Basic Information

• Taxon OID: 3300020160
• Scaffold ID: Ga0211733_11184400
• Source Dataset Name: Freshwater lake microbial communities from Lake Erken, Sweden - P4710_105 megahit1
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: SciLifeLab
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 5468
• Total Scaffold Genes: 18
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (16.67%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (20.00%)
• Associated Families: 5

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Lake Microbial Communities From Lake Erken, Sweden

Source Dataset Sampling Location

• Location Name: Lake Erken, Sweden
• Coordinates
  • Lat. (^o): 59.83763399
  • Long. (^o): 18.6203826
  • Depth (m): 0 to 10

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000957	Metagenome / Metatranscriptome	821	Y
F001923	Metagenome / Metatranscriptome	617	Y
F003583	Metagenome / Metatranscriptome	478	Y
F014261	Metagenome	264	Y
F053888	Metagenome	140	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0211733_1118440012	F014261	N/A	MKSLIAVSFLIIFGWLAVVTFCGPELARAINGPEPVKAKVTHRRAR
Ga0211733_1118440015	F003583	GGA	MAKAPSQESGSANLLLAVCLLTAFAGLTAFSSAYIAGYVLDQLQSTDALVMIVTDAGLRSDSKDLEANMSAATLALKSVRDLGWALAVGCLGVGVAVFVRSRRQNA
Ga0211733_1118440016	F001923	N/A	MSPSPPIDPESIPKELKDGVVASVLGGLAMTARLLMSTTPVSAGWVIRRVLAAGITSCLAGYAIAEHIQSPGLRMGAIGAIGYCAPEALDYLLKAFKARAEKEVGAIAGKKPNGKSTKPGKRKR
Ga0211733_111844006	F000957	N/A	MSAFQHLDGMTALLSELYEVNERVLTGDIMSAKAAIASPRMPKLIRHYHEALSEDGAQAIYLEPFVAAGGWVGLTYSYTLPDGFTVSGSVTPRRV
Ga0211733_111844009	F053888	N/A	MNQEPTDTVLIGDRPLRLSRPVLPHAARRLASVFPQLNALNIAGKSQADAAFALGVSVGAIRTWINLTDMTWTNLKRRGPYKTKA