Scaffold Ga0211733_11089948

Overview

Basic Information

• Taxon OID: 3300020160
• Scaffold ID: Ga0211733_11089948
• Source Dataset Name: Freshwater lake microbial communities from Lake Erken, Sweden - P4710_105 megahit1
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: SciLifeLab
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 6237
• Total Scaffold Genes: 17
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (5.88%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Lake Microbial Communities From Lake Erken, Sweden

Source Dataset Sampling Location

• Location Name: Lake Erken, Sweden
• Coordinates
  • Lat. (^o): 59.83763399
  • Long. (^o): 18.6203826
  • Depth (m): 0 to 10

Associated Families

Family	Category	Number of Sequences	3D Structure?
F060894	Metagenome / Metatranscriptome	132	Y
F070098	Metagenome / Metatranscriptome	123	Y
F074869	Metagenome / Metatranscriptome	119	Y
F097347	Metagenome / Metatranscriptome	104	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0211733_1108994810	F070098	N/A	MEIKDILSELITVANSAMNERGCPENFDLENFISVIEDYYEELDEIVEFAYLDDKEEYDFSDEDNY
Ga0211733_1108994816	F097347	N/A	MPYVDLESVNKSTVVSELKTVIGKKVSQNQSPTLVAKLVKVGKVNCVFESVESDFKETIGLTGYKVGVQYKVPTQYAWNSFFY
Ga0211733_110899484	F060894	N/A	MAFQTRDEAQDKVSRKLDRVLNKKKKIVPLSQESWSDLNQRGATLAEQYEWIRLDKKKKEREANNKA
Ga0211733_110899485	F074869	N/A	MTTELLTKCLEVETWTRSLTMRGLERDEIVARIDEMYEPETLDEMEAYSEAILYARLGVL