Scaffold Ga0211733_10975766

Overview

Basic Information

• Taxon OID: 3300020160
• Scaffold ID: Ga0211733_10975766
• Source Dataset Name: Freshwater lake microbial communities from Lake Erken, Sweden - P4710_105 megahit1
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: SciLifeLab
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2114
• Total Scaffold Genes: 4
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (25.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia → Ecdysozoa → Nematoda → Chromadorea → Rhabditida → Spirurina → Spiruromorpha → Filarioidea → Onchocercidae → Wuchereria → Wuchereria bancrofti (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Lake Microbial Communities From Lake Erken, Sweden

Source Dataset Sampling Location

• Location Name: Lake Erken, Sweden
• Coordinates
  • Lat. (^o): 59.83763399
  • Long. (^o): 18.6203826
  • Depth (m): 0 to 10

Associated Families

Family	Category	Number of Sequences	3D Structure?
F055731	Metagenome / Metatranscriptome	138	N
F097340	Metagenome / Metatranscriptome	104	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0211733_109757662	F055731	N/A	MIKLIKLLELEKPTNIYAPGEEPGEAPEKDLMKKGFKLGKPTIDPETGASASDVTYLPAFETIRRQALSMRKEFQPFKFSANEDIAKVAKDINTNLTKVSQMIFALEKMIELQNKSK
Ga0211733_109757664	F097340	N/A	MIKLSNILLEALVLFKIEILIKTSTDENQVYIYNEIRGLKDVVVVTVEQNDFLNSKGNDKHQFSLLKMKYLASQEPKAAINSIKTDALVTTRIPGLLQFIPRFNTIEKVGEY