Scaffold Ga0211733_10918385

Overview

Basic Information

• Taxon OID: 3300020160
• Scaffold ID: Ga0211733_10918385
• Source Dataset Name: Freshwater lake microbial communities from Lake Erken, Sweden - P4710_105 megahit1
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: SciLifeLab
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2134
• Total Scaffold Genes: 9
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 8 (88.89%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Chlorobi → unclassified Chlorobiota → Chlorobiota bacteirum (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Lake Microbial Communities From Lake Erken, Sweden

Source Dataset Sampling Location

• Location Name: Lake Erken, Sweden
• Coordinates
  • Lat. (^o): 59.83763399
  • Long. (^o): 18.6203826
  • Depth (m): 0 to 10

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002268	Metagenome / Metatranscriptome	576	Y
F057141	Metagenome	136	Y
F088912	Metagenome / Metatranscriptome	109	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0211733_109183853	F057141	AGGAG	MRAEQSWSLLDPKPVMLYIEKCDEYLVYWNGVVIPHKMALCMAMEYASGIYPTPEMKTALEQDYARLYYSNAFNTRAWDLKVCDGPVYPYLKRIMKEHLTKVIQEPKRPAAEVLGWFDYSKARKEHDV
Ga0211733_109183855	F002268	GGA	MSGTPASSSPGISGFIEIFEGRLNKMKLHLKEELGKAKSDRDRKAIRRITTDARKLNKTLKEMRNSTTKLCPHCGEKL
Ga0211733_109183856	F088912	GGAG	MTEGERAGRWAMIYIYTVLFALWFNIVAIAVWHIKEWFL