Scaffold Ga0211733_10891105

Overview

Basic Information

• Taxon OID: 3300020160
• Scaffold ID: Ga0211733_10891105
• Source Dataset Name: Freshwater lake microbial communities from Lake Erken, Sweden - P4710_105 megahit1
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: SciLifeLab
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 18643
• Total Scaffold Genes: 42
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 36 (85.71%)
• Novel Protein Genes: 6
• Novel Protein Genes with Ribosome Binding Sites (RBS): 6 (100.00%)
• Associated Families: 6

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Lake Microbial Communities From Lake Erken, Sweden

Source Dataset Sampling Location

• Location Name: Lake Erken, Sweden
• Coordinates
  • Lat. (^o): 59.83763399
  • Long. (^o): 18.6203826
  • Depth (m): 0 to 10

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001094	Metagenome / Metatranscriptome	780	Y
F009331	Metagenome / Metatranscriptome	319	Y
F075715	Metagenome	118	N
F093236	Metagenome	106	Y
F093237	Metagenome	106	Y
F100350	Metagenome	102	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0211733_1089110512	F001094	AGAAGG	MNAKMKSMLATYLRAGVASVIALYLAGVTDPKALATAGIAAIAGPLLKALDPKATEFGRGAK
Ga0211733_1089110524	F009331	AGAAGG	MICENCIKAGEENSLNHLKRAAHWHEKCEGCVCQHKTGQGWVKVEGVPTPLMQTQSP
Ga0211733_1089110529	F100350	AGGCGG	MIYAFKCECGSTREIEQSIHAEILEPMCTDCHSSMSRVWSSPAVTFKGPGFYSNGG
Ga0211733_1089110530	F093236	GGAGG	VRTKHLSLVTSVPSVTMGSKEIVPSPFGPVRAGLTTSQTTPDQRLLELLSSLESVVESLNYKSFTLYDMLNTAIEEISAVLSATLTKEDGIEDMIE
Ga0211733_1089110533	F075715	AGGAG	MNKEYLIAKADLCKDLAIEQLTAGDSEEGVKNLKRMIRALEEINMINYLERRGER
Ga0211733_1089110538	F093237	GAGG	MKYKYDLGDTATMSHREMLDALLAKEVAPRTIVGTGYKNGRQVAIDYLKEMIAKEREGK