Scaffold Ga0211733_10885310

Overview

Basic Information

• Taxon OID: 3300020160
• Scaffold ID: Ga0211733_10885310
• Source Dataset Name: Freshwater lake microbial communities from Lake Erken, Sweden - P4710_105 megahit1
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: SciLifeLab
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 19062
• Total Scaffold Genes: 40
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 7 (17.50%)
• Novel Protein Genes: 9
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (22.22%)
• Associated Families: 9

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Pelagibacterales → unclassified Pelagibacterales → Pelagibacterales bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Lake Microbial Communities From Lake Erken, Sweden

Source Dataset Sampling Location

• Location Name: Lake Erken, Sweden
• Coordinates
  • Lat. (^o): 59.83763399
  • Long. (^o): 18.6203826
  • Depth (m): 0 to 10

Associated Families

Family	Category	Number of Sequences	3D Structure?
F006345	Metagenome / Metatranscriptome	375	Y
F016262	Metagenome / Metatranscriptome	248	Y
F019993	Metagenome / Metatranscriptome	226	Y
F023325	Metagenome / Metatranscriptome	210	N
F026511	Metagenome / Metatranscriptome	197	N
F028461	Metagenome	191	N
F049572	Metagenome / Metatranscriptome	146	N
F052474	Metagenome / Metatranscriptome	142	N
F088542	Metagenome	109	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0211733_1088531012	F026511	GAG	MNTTTEIQYVGEATMITSDCIAIAFNRPTGSKPVNVNGYPLEQGQTLRISQNVGDIDRTQYQIYFGSGAGNEECYVFRTLIIDGWHNG
Ga0211733_1088531016	F052474	N/A	MSDKEKILAAINKLAKLDPNLGENLSKLAKLAEDKPFIYKQAIQQLNSL
Ga0211733_1088531018	F023325	AGTAG	MRILSPLIEYLTVSKKMKQVGSYEGAYTKSVYLPFTATALVGTQYYFNPDEVLDSKNNFITTIEMTDTGTNATAPTSPTTDPLSPGQAAQGYLYICNTKREILATLPLYTLIRRLNAGKPQYLYFEDPVVWQNCFIQFESLGTAINTAHCVWLKVTYSPVEK
Ga0211733_1088531021	F016262	N/A	MIKFNKSTLTEIAGLGAGAVAGAYVSQKVLTKADGTYLVGSGTTGKLVADLAPIAVGLLLQGQSNTFAKEAGKGMIAQAAGGFIKSKFPALGITGDGDYSSDATLLSGMDTGVDNPMISGDGNMVAPSIGAAYYDDGNEAAY
Ga0211733_1088531025	F019993	N/A	LLFTNFVMMKQEVKLLLVAGVGYLGFKAYQIYTAIKKLSYAPTGIRFTLNKSRGAIGGTLFVDIINPTAASITVDGFTGTVTTKEGTMIGDYKGDRLILKPGVNNVRISWGSRSSLTLVNLAVDISKGKFPILNFNTVYNIKGFPIPTSFKMDTKAYKPTFI
Ga0211733_1088531034	F028461	N/A	MFKNPQLQESIIKQYKEAGLDFQVKHSNYNTQIIGQESVIKFIQTEHSIKVFIAYNKIVADLKKSDKTVEILQGDWSTENFDSKNGLKPCSYKTVLNLDITSAYPYCLFINKLITLDTFNYLMALPKNERLPAIGMIAKKSVWIDYQKGKATTWDVKTGEYANIFFFVIQQITDLMAWAADIAGDDFLFYWVDGIFLKPTISKKKLQEITGIFAEQGYYYKYENVKNFSVVRENDKLYINMIKNGDEKPYTMYDKNLARNFTKVLQQLENA
Ga0211733_1088531035	F088542	N/A	MAKKKSTPKYIDRKYNYPKGYTQRGKKKTGFAPSKLGAKLFVEANLDKIKKGTLPFDSLTTREKRIYRGKQSNTFANTFQFNKKNFYDPTGVLRKALDNIPNLKGKRNLTNLLPEKDFKEFFDQRINPTKGKLNEKDRSKWLEFSSSLYDFNKGEKKQFYRDESGSLMDIVTKLQKSRKQGREVRVIDTDGSIKTGVDAIERMRSFEAEKVKQFTDAADEGDNIQLQIIYISTDWNPYTNTVTYNLNNVQVNDLNQTP
Ga0211733_1088531036	F049572	N/A	MENQQTVARVNDVNAAITPEMLEASANLSKLKTAINLSPEYIELAKPGENFRGIFWGFTEITVNDQVSDEQRTIPAAAFLVDKSIRINAGVALVSECKKAGIDKGTPLEVTFKEKKGNLKIYSLTLLG
Ga0211733_108853106	F006345	N/A	MDNKTAKQIVNEALNIAIAKGCFGLVEVTNIVKAVEFLSNQPDVEFGSVDQEYLD