NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0211733_10851507

Scaffold Ga0211733_10851507


Overview

Basic Information
Taxon OID3300020160 Open in IMG/M
Scaffold IDGa0211733_10851507 Open in IMG/M
Source Dataset NameFreshwater lake microbial communities from Lake Erken, Sweden - P4710_105 megahit1
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterSciLifeLab
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)23519
Total Scaffold Genes33 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)8 (24.24%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Lake Microbial Communities From Lake Erken, Sweden

Source Dataset Sampling Location
Location NameLake Erken, Sweden
CoordinatesLat. (o)59.83763399Long. (o)18.6203826Alt. (m)Depth (m)0 to 10
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002045Metagenome / Metatranscriptome599Y
F032658Metagenome / Metatranscriptome179Y

Sequences

Protein IDFamilyRBSSequence
Ga0211733_108515074F002045GAGMERKKNRFDMNFFCVYVKTRKKMDKYIKVNKVKNKYIIDIKKIIEEEELSHSEDKTYLKIIIFNKIRQAIEKQKDIYYIPDFDNDFSIEKLLNLKKILGENPFNVLVFYNEFRKFPEIIDDVFSNLSKFDNSQIIRDY
Ga0211733_108515077F032658N/AMRIKSFESWNKINEERALRTLPTDEQYWKRKGKNGKEVALYTHDDMDGIFCAIEMKKWLEGRGFKIVKYGIVNYSEGWKYTTLDPKLINVALDFANMPGDERDEHIDWYLDHHGLFNPDQDEKYKDAPVKKLSTSSAYEALCIVLGLPTDELVLSVIDMIDAAKYQDYKVDWQRLLDFDLSEIKKSENKRLEFAAAFNQYLKRSDVETIISVIANCKDASIYGIFNAMKAVYPEHNRYTPRQGGGKKDFIEDSSSRLSQMQQRTRGRKSSSKQTFTSQQDLLSNLWSGNAIRPDGYFKIGDLVFVPTGTWANALRARTIVERDFKDGVLDSEPKFILLQYGGTLQVCAYKKMAQTEGLPKTKDGKAIDDLGAYMTSLLANFKQHLGYHDPDTSIGQDEITVSGGHGGIGSISNIFGTCDVAPYEGLRFIDMFKNKILNDLSGVKFSMNQKWGDASEQKAREPEIDNKVLSADAVTRLDKYGKPIPKNENFDYQIVDKDGNIRDVSREEFLQAGAEKAMRPTEMRIDNETNKVIAKFEKFKNR
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