Scaffold Ga0211733_10705148

Overview

Basic Information

• Taxon OID: 3300020160
• Scaffold ID: Ga0211733_10705148
• Source Dataset Name: Freshwater lake microbial communities from Lake Erken, Sweden - P4710_105 megahit1
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: SciLifeLab
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1824
• Total Scaffold Genes: 6
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (83.33%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Lake Microbial Communities From Lake Erken, Sweden

Source Dataset Sampling Location

• Location Name: Lake Erken, Sweden
• Coordinates
  • Lat. (^o): 59.83763399
  • Long. (^o): 18.6203826
  • Depth (m): 0 to 10

Associated Families

Family	Category	Number of Sequences	3D Structure?
F016365	Metagenome / Metatranscriptome	247	Y
F074452	Metagenome / Metatranscriptome	119	N
F083781	Metagenome / Metatranscriptome	112	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0211733_107051481	F016365	AGAAGG	MNDLIKITLATGAIVYGMTAPLPANEAVKETQDAINKWYETASTSISQDFTALGVTVSNMPEKISLGVSNFVDETVAYQKESWAKTLTFEQEKQNWETIKGWFT
Ga0211733_107051484	F083781	GGAGG	MININREKFEKEILDLAKTSNGNSPSFTGGSLYAEMIDQDHAELLRADLEDFANANWGDGTMTSPYSTSVKMYKLADQNGRTEFVYDFVPSATAEDLPPEVDMMLCLEAEIARGK
Ga0211733_107051486	F074452	N/A	MRIPVCPTTKDLVDMVRLDIDPFTRAEILETQRAQDYWEMSYIDESNRVRYRMSCVLVEEEILDLLYCHGYITANQQAATINQTRRTDDK