Scaffold Ga0211733

Basic Information
Taxon OID	3300020160 Open in IMG/M
Scaffold ID	Ga0211733_10673402 Open in IMG/M
Source Dataset Name	Freshwater lake microbial communities from Lake Erken, Sweden - P4710_105 megahit1
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	SciLifeLab
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300020160 Open in IMG/M

Scaffold ID

Ga0211733_10673402 Open in IMG/M

Source Dataset Name

Freshwater lake microbial communities from Lake Erken, Sweden - P4710_105 megahit1

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

SciLifeLab

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	12581
Total Scaffold Genes	16 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	14 (87.50%)
Novel Protein Genes	6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	5 (83.33%)
Associated Families	6

Scaffold Components

Scaffold Length (bps)

12581

Total Scaffold Genes

16 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

14 (87.50%)

Novel Protein Genes

6 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

5 (83.33%)

Associated Families

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	(Source: UniRef50)

Taxonomy

All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Lake Microbial Communities From Lake Erken, Sweden

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Lake Microbial Communities From Lake Erken, Sweden

Source Dataset Sampling Location
Location Name	Lake Erken, Sweden
Coordinates	Lat. (^o)	59.83763399	Long. (^o)	18.6203826	Alt. (m)	Depth (m)	0 to 10
Location on Map

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Source Dataset Sampling Location

Location Name

Lake Erken, Sweden

Coordinates

Lat. (^o)

59.83763399

Long. (^o)

18.6203826

Alt. (m)

Depth (m)

0 to 10

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001733	Metagenome / Metatranscriptome	644	Y
F006623	Metagenome / Metatranscriptome	368	Y
F039641	Metagenome / Metatranscriptome	163	N
F049628	Metagenome / Metatranscriptome	146	N
F050378	Metagenome / Metatranscriptome	145	N
F059968	Metagenome / Metatranscriptome	133	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0211733_1067340212	F039641	N/A	MIPAAYSNALKNAIQAYSYADRVAIWRTVNQSDGIGGISQHWIQVAEIRATISNTGDTEGIVGGMIEQSGTWTLTCSPDIEVRADDRIYVSGNPQALSPYYECIGSDYGHTNAVSQTIALRARTNG
Ga0211733_1067340213	F050378	GAGG	MSPEMWVQIGIQAFITTVSIGAAWVALQVRLTRLETQVAHIINTLDGQQQEVRRIEQRLGKLENKVSALEAIIQR
Ga0211733_1067340214	F001733	GGAGG	MNSISISRLIVVVLIAFVASFSTVFGDGIRTSEAKDIAELGAVMAVYGGKAVAAGLTAAMSAALGFLTMPFKGVQANSLKVGK
Ga0211733_1067340215	F006623	AGGTGG	MNFQNYRLEPNPNTPGDWIVFGDIYDNDNNLIGTFGENGTSVFGWWVLQDAEFQQFYSNQFAVVMAQEIVAGTTG
Ga0211733_106734023	F059968	GGGGG	MSKATGTEEKAELLVRIKELRAAGNSISRTAQIMCMTRGTVQRWINEQRPEREVKKMDPYVSIDEKTAIVVKWAELIASGVSRSDAAASVGFPTMMLNRWLMSEPSLRVEFQETVGKKQNNTGRKSFESIMTDVRAGRPVWRDGGRFKIQLVEAALMRYELDGANVWRCKGFATLSGNDVLARDWTVVS
Ga0211733_106734024	F049628	GGA	MKFSEVIEPLMHGKPVTRASWEHDVYVRYSDLYEAFVMHAIPEPKIIQGITLYPEWMLADDWMWGEFHPVKDEIKWTQTTS

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0211733_10673402

Overview

Ecosystem & Geography

Associated Families

Sequences