Scaffold Ga0211733_10643978

Overview

Basic Information

• Taxon OID: 3300020160
• Scaffold ID: Ga0211733_10643978
• Source Dataset Name: Freshwater lake microbial communities from Lake Erken, Sweden - P4710_105 megahit1
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: SciLifeLab
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4438
• Total Scaffold Genes: 13
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 10 (76.92%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (60.00%)
• Associated Families: 5

Taxonomy: All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Crocinitomicaceae → unclassified Crocinitomicaceae → Crocinitomicaceae bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Lake Microbial Communities From Lake Erken, Sweden

Source Dataset Sampling Location

• Location Name: Lake Erken, Sweden
• Coordinates
  • Lat. (^o): 59.83763399
  • Long. (^o): 18.6203826
  • Depth (m): 0 to 10

Associated Families

Family	Category	Number of Sequences	3D Structure?
F007310	Metagenome	353	Y
F013084	Metagenome	274	Y
F015472	Metagenome	254	Y
F039133	Metagenome	164	N
F048994	Metagenome	147	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0211733_106439781	F013084	GGA	MLGLMEETKNVVLSRGHNVKNWLVLGNDCYALECADCKKTVMIKEHPLPNEIK
Ga0211733_1064397811	F015472	AGG	MVVARWRQVLFTERSRKVMAHGYLNNGGTRWVTDNKIQVTGEVNGKSYDKMRQPMFWEQLGNFAVCYVRVGRTVFCGFTNDNDGTIQLKLEKCKVVR
Ga0211733_1064397812	F039133	AGGA	MNTTDKVIIRFKSRVPKMLYTAHYNGLLIGSGSDAQQLGETYARRYRAEWLLQDGDKFYSQKGLVK
Ga0211733_106439782	F007310	N/A	MRTVLWVTNDNERWYNHHHYEFLIEDITGFNLQKDLCAESVKYMAKRLKDTPYHRAFRNKYSIYQDEYKTLVEKFNNQADNNGRIVVE
Ga0211733_106439784	F048994	N/A	MIGTVKIEFGAMNLYVNGVCVATTSTIAGIKHAAKRYNLQGYIMATG