Scaffold Ga0211733_10565940

Overview

Basic Information

• Taxon OID: 3300020160
• Scaffold ID: Ga0211733_10565940
• Source Dataset Name: Freshwater lake microbial communities from Lake Erken, Sweden - P4710_105 megahit1
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: SciLifeLab
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 15134
• Total Scaffold Genes: 24
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 20 (83.33%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Lake Microbial Communities From Lake Erken, Sweden

Source Dataset Sampling Location

• Location Name: Lake Erken, Sweden
• Coordinates
  • Lat. (^o): 59.83763399
  • Long. (^o): 18.6203826
  • Depth (m): 0 to 10

Associated Families

Family	Category	Number of Sequences	3D Structure?
F036143	Metagenome	170	N
F090065	Metagenome	108	N
F095452	Metagenome	105	N
F104708	Metagenome	100	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0211733_1056594016	F036143	AGG	MPATASYQVYGIQEALAEINKVDRLLRRQITKDIQAGAGTRLVTAARSFIPTKTPLSRMVNGNMIKGRDGTGWSRTRVVAGIRTVVGKRGQRARTVRFSNGRTADFKATQYQLLVLQQRDAAGAIWDHAGIRGGGQFVTNLLAEGEHVGPAAAPRALEPAAESVLPAVEAEVDKIVERVMTIVNRNLVTTRTR
Ga0211733_105659402	F095452	AGG	MSKLTEADRQELRALFSQLADIQADAILEELTEQPHQANALKQDLWGLEARLADIHADAN
Ga0211733_105659403	F090065	GAG	MSKVLVTLDYEELEYCAISGARRNIRAMQKDRKPRQSTVAYEKQHWWQSHVTGVIGEYAVAKSLGEHWLDLENDRGGFDLLSYQVRSTEYPNPNLRIRKGDDENHVFILAQVKNNRVLIHGWATGYEIKMHGTPQYENSIYLTCEQLNDMSLLMHPTIYTSQVTEWERPDYQ
Ga0211733_105659407	F104708	GAG	MVNPTDHLDQALANLWANTRPKATDVLIRNLRAHAYSYAMDDPKLCEDLRQAIGRLEHPSSLEPKQLSILDRLDDLSQDLYDDGHEDLAAQVNAFFHVVEAALRGAK