Scaffold Ga0211733_10466476

Overview

Basic Information

• Taxon OID: 3300020160
• Scaffold ID: Ga0211733_10466476
• Source Dataset Name: Freshwater lake microbial communities from Lake Erken, Sweden - P4710_105 megahit1
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: SciLifeLab
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2260
• Total Scaffold Genes: 7
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (71.43%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Lake Microbial Communities From Lake Erken, Sweden

Source Dataset Sampling Location

• Location Name: Lake Erken, Sweden
• Coordinates
  • Lat. (^o): 59.83763399
  • Long. (^o): 18.6203826
  • Depth (m): 0 to 10

Associated Families

Family	Category	Number of Sequences	3D Structure?
F060913	Metagenome / Metatranscriptome	132	Y
F068832	Metagenome / Metatranscriptome	124	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0211733_104664764	F060913	GAG	MIKVYQIQLTDAEIAAVNNGETSDRIKAYFDRSFERTFKAENFQYYTHVANVDTNDMENAFEAMNLWEESIYFEDIFIQTLGRCSSMSVGDILDVDGKLFRCASCGFDEITA
Ga0211733_104664766	F068832	AGAAG	MLEIIKWFGTACVILAATCRAFEFHTVDLILSIIGAAAWGYAAFKMQDKPLMVVNGFITAILVYGVVK