Scaffold Ga0211733_10438444

Overview

Basic Information

• Taxon OID: 3300020160
• Scaffold ID: Ga0211733_10438444
• Source Dataset Name: Freshwater lake microbial communities from Lake Erken, Sweden - P4710_105 megahit1
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: SciLifeLab
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3985
• Total Scaffold Genes: 11
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (27.27%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Lake Microbial Communities From Lake Erken, Sweden

Source Dataset Sampling Location

• Location Name: Lake Erken, Sweden
• Coordinates
  • Lat. (^o): 59.83763399
  • Long. (^o): 18.6203826
  • Depth (m): 0 to 10

Associated Families

Family	Category	Number of Sequences	3D Structure?
F018001	Metagenome	237	Y
F042337	Metagenome	158	Y
F092051	Metagenome	107	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0211733_1043844410	F042337	AGG	MELVIEGLDKLILYTYVQRKISDIRVDNKGVGRDASYVFTFPPIDSEIDGWRNKMEVYLCKFPTSNGVYELFVMGLHGVTCSYLDLKQIRNIDIFQAHFISTMDRAKTYWESL
Ga0211733_1043844411	F018001	N/A	MLTIENIEKLKDTILNDWKILDAGGDTRFQLPKNIYVLTFGRLDNVGNVLDDRAGVIIDRDISGLMSGYGIRVMYEHWDYELHTTYWRKENIMNKDAFFGMVLNKI
Ga0211733_104384447	F092051	N/A	MKSFKIRENQVELDGILYGQSPTELKIKGKAGNIQSIMIANRGQFFPISGEFNDGTIQITEDSTGIVEDTKPTKVKKSKKGLFTLNENR