Scaffold Ga0211733_10422925

Overview

Basic Information

• Taxon OID: 3300020160
• Scaffold ID: Ga0211733_10422925
• Source Dataset Name: Freshwater lake microbial communities from Lake Erken, Sweden - P4710_105 megahit1
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: SciLifeLab
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2088
• Total Scaffold Genes: 10
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 9 (90.00%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 5 (100.00%)
• Associated Families: 5

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Lake Microbial Communities From Lake Erken, Sweden

Source Dataset Sampling Location

• Location Name: Lake Erken, Sweden
• Coordinates
  • Lat. (^o): 59.83763399
  • Long. (^o): 18.6203826
  • Depth (m): 0 to 10

Associated Families

Family	Category	Number of Sequences	3D Structure?
F006842	Metagenome	363	Y
F027758	Metagenome	193	Y
F038155	Metagenome	166	Y
F053128	Metagenome	141	N
F069714	Metagenome	123	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0211733_104229251	F027758	GAG	MFIDLILVSSWVFGFFFLAGAIAWLADRLASFHLEGMERVRKLQAREKEREGAK
Ga0211733_104229253	F038155	AGAAGG	MERKNGKAWKKKPKVQKKTGRTIGGYSLSKLAIRAIKRGAK
Ga0211733_104229256	F053128	AGGAGG	MKGYFVIDRQDTGWKEGYLWKSIKEIADSIRDYDDYKELEVSNLTHSQLCELWDFEYHRITPANCNKYNVRPSELTREWI
Ga0211733_104229257	F006842	GGAG	MKATPVICGDHLVPISECNCLDYLREIEGSAKRLIQLTKEREEMK
Ga0211733_104229259	F069714	AGGAG	MNIEIKESYMPEYTKAITFECEGKEYLAEVYLGKHCSDYTLYEGNKRLEDKPAWLEKAEQEDANFSFMFFIDNLAWEYEQRKEKV