Scaffold Ga0211733_10421472

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0211733_10421472

Scaffold Ga0211733_10421472

Overview

Basic Information
Taxon OID	3300020160 Open in IMG/M
Scaffold ID	Ga0211733_10421472 Open in IMG/M
Source Dataset Name	Freshwater lake microbial communities from Lake Erken, Sweden - P4710_105 megahit1
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	SciLifeLab
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	2011
Total Scaffold Genes	9 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	8 (88.89%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (100.00%)
Associated Families	2

Taxonomy
Not Available	(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Lake Microbial Communities From Lake Erken, Sweden

Source Dataset Sampling Location
Location Name	Lake Erken, Sweden
Coordinates	Lat. (^o)	59.83763399	Long. (^o)	18.6203826	Alt. (m)		Depth (m)	0 to 10
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F013082	Metagenome	274	Y
F019968	Metagenome / Metatranscriptome	226	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0211733_104214723	F019968	AGGA	MARQDVGVICSMSYYEMKLMTAVLSRILLDNEVRGEHTKKRITTLISKLNNMMSKQC
Ga0211733_104214729	F013082	AGGAG	MTTVKEEINRLFLESQKNPSIVASEAPYYFDLCSVEDKTITLNEFYKKFPYYNPDMNCDYWNQQHKKWKEIWTDKA

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