NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0211733_10314058

Scaffold Ga0211733_10314058


Overview

Basic Information
Taxon OID3300020160 Open in IMG/M
Scaffold IDGa0211733_10314058 Open in IMG/M
Source Dataset NameFreshwater lake microbial communities from Lake Erken, Sweden - P4710_105 megahit1
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterSciLifeLab
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1151
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (25.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Archaea → unclassified Archaea → archaeon(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Lake Microbial Communities From Lake Erken, Sweden

Source Dataset Sampling Location
Location NameLake Erken, Sweden
CoordinatesLat. (o)59.83763399Long. (o)18.6203826Alt. (m)Depth (m)0 to 10
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F012774Metagenome / Metatranscriptome277Y
F041601Metagenome / Metatranscriptome159Y

Sequences

Protein IDFamilyRBSSequence
Ga0211733_103140582F041601N/AMKQQILKLVNQIKENLKSIDKEGISHPLIDDIYEKLELIEDEIYEDDAQADALSFEDEDY
Ga0211733_103140583F012774GGAMKDNPIILHIDLGNQSVHGWLKENQYTIFSELIRYSKKLLEEKLDMIQAIMVSNLHDNIVFILKKENVKLTLDKAMDFFMEIEEYEKCAEIRNLNILIQNLENEATNTKVSKPNQRKSKINR

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