Scaffold Ga0211733

Basic Information
Taxon OID	3300020160 Open in IMG/M
Scaffold ID	Ga0211733_10280400 Open in IMG/M
Source Dataset Name	Freshwater lake microbial communities from Lake Erken, Sweden - P4710_105 megahit1
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	SciLifeLab
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300020160 Open in IMG/M

Scaffold ID

Ga0211733_10280400 Open in IMG/M

Source Dataset Name

Freshwater lake microbial communities from Lake Erken, Sweden - P4710_105 megahit1

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

SciLifeLab

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	32638
Total Scaffold Genes	53 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	14 (26.42%)
Novel Protein Genes	5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (40.00%)
Associated Families	5

Scaffold Components

Scaffold Length (bps)

32638

Total Scaffold Genes

53 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

14 (26.42%)

Novel Protein Genes

5 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

2 (40.00%)

Associated Families

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	(Source: UniRef50)

Taxonomy

All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Lake Microbial Communities From Lake Erken, Sweden

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Lake Microbial Communities From Lake Erken, Sweden

Source Dataset Sampling Location
Location Name	Lake Erken, Sweden
Coordinates	Lat. (^o)	59.83763399	Long. (^o)	18.6203826	Alt. (m)	Depth (m)	0 to 10
Location on Map

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Source Dataset Sampling Location

Location Name

Lake Erken, Sweden

Coordinates

Lat. (^o)

59.83763399

Long. (^o)

18.6203826

Alt. (m)

Depth (m)

0 to 10

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001923	Metagenome / Metatranscriptome	617	Y
F003583	Metagenome / Metatranscriptome	478	Y
F042341	Metagenome / Metatranscriptome	158	N
F054620	Metagenome / Metatranscriptome	139	Y
F068582	Metagenome / Metatranscriptome	124	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0211733_1028040011	F068582	N/A	MPSPTVYGIRTIAEQSLKAWFDLNAAMLPGVEINAGQTDEVRTVPIIILHAETAQAHRDLGATPLGNFELTVKVYVYSSADDSTLAQHRERVENAQAILQDVAGLQSAWTEGQLYAAWIVSDDEGVADRRYGNVLTYTLVAVYPPAA
Ga0211733_1028040022	F042341	N/A	MARRKNKPQAVFYKEPHFTFRKLGRAKPSHAPNCKTPFGYCWKGYGDIHLDPRQPEHEMIDTVVHELVHDALPFLAEEAVEPISSRIASAMWRLGYRRTIR
Ga0211733_1028040023	F001923	N/A	MSASPVEPDALSGPFKDGLVASTLGGLAMTARLLLSTEPVSAGWVIRRVLAAAITAAFVGYAIADHIQSPGLKMGAVGASGYAAPECLDYLMRAIKARAEKEVGSIERSVKPDAKKTPAKKRRRR
Ga0211733_1028040024	F003583	GAGG	MQKRRPQKNDAAGDPTNLWLAVSLLTAFAGVSALASAFIAGYVLDQLQSTEALALIVTDGGLRSDSADLDRNLSWATLALKAVRDLGWALAVGCLGVGIAVLARFCRPRAATRLPGG
Ga0211733_102804009	F054620	AGG	MGSIQNEWAADAAEILNEIPKAVTVRRGSGPSTSFNVLMSAPMVQQDLETGGFLNSTSYDVKFLKADADLNPGVVVYGNLVSFNGGDYRIVAINDRPPSAWIIVRVQTKAGPA

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0211733_10280400

Overview

Ecosystem & Geography

Associated Families

Sequences