Scaffold Ga0211733_10232123

Overview

Basic Information

• Taxon OID: 3300020160
• Scaffold ID: Ga0211733_10232123
• Source Dataset Name: Freshwater lake microbial communities from Lake Erken, Sweden - P4710_105 megahit1
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: SciLifeLab
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2769
• Total Scaffold Genes: 9
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (22.22%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Chitinophagia → Chitinophagales → Chitinophagaceae → unclassified Chitinophagaceae → Chitinophagaceae bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Lake Microbial Communities From Lake Erken, Sweden

Source Dataset Sampling Location

• Location Name: Lake Erken, Sweden
• Coordinates
  • Lat. (^o): 59.83763399
  • Long. (^o): 18.6203826
  • Depth (m): 0 to 10

Associated Families

Family	Category	Number of Sequences	3D Structure?
F005879	Metagenome / Metatranscriptome	387	Y
F028509	Metagenome / Metatranscriptome	191	Y
F051122	Metagenome / Metatranscriptome	144	N
F058141	Metagenome / Metatranscriptome	135	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0211733_102321233	F051122	N/A	MTNEEYKLQLSALKTTLEIVLIEGEKKGKEISVAYECGMYLGTIKAVISHLEELTNDSTG
Ga0211733_102321234	F058141	N/A	MTILTHTNNMKIRIENIECRISHNQYEFVKWYPNKYFGTKAQLIADGYELQPIHDHGFVLTKGNHTIHDSCFLNPEGCYTIATIVYDKNEHCTEIKSVGSRLLDLTKNERMYFFEVYHYADKQIKKENKNKDND
Ga0211733_102321236	F028509	N/A	MENKVKVSLVIQSHLKDAMVEVHHQELMDEGQERLRFVMYLIHYYPDTTQEILVDFVYEQFKQFGK
Ga0211733_102321237	F005879	N/A	MIDNNVFWKEDFTDGVVKGGIYVRSFDLKKFLELVEANENGNGGEVVGLRFDGNNLEVLVKDLAS