Scaffold Ga0211733_10231031

Overview

Basic Information

• Taxon OID: 3300020160
• Scaffold ID: Ga0211733_10231031
• Source Dataset Name: Freshwater lake microbial communities from Lake Erken, Sweden - P4710_105 megahit1
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: SciLifeLab
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3432
• Total Scaffold Genes: 6
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (33.33%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Lake Microbial Communities From Lake Erken, Sweden

Source Dataset Sampling Location

• Location Name: Lake Erken, Sweden
• Coordinates
  • Lat. (^o): 59.83763399
  • Long. (^o): 18.6203826
  • Depth (m): 0 to 10

Associated Families

Family	Category	Number of Sequences	3D Structure?
F025032	Metagenome	203	N
F051916	Metagenome	143	N
F082159	Metagenome / Metatranscriptome	113	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0211733_102310312	F025032	GGA	MISLIKIMEGGSNVDKFTFKQRDAGGVRPSYQNTKLVKQGSTGDYVKYNVMVMGKFGGTIYYNKSDKSMIANGGESNTTFPAKRFKSIKDAIDYIGGNSTRSYNTNIPLDGMDTSFNTKTYN
Ga0211733_102310313	F051916	N/A	MISLSNILNELEIPSDRWVDLDLNKIDDDGMKQIWQMYITTYLNAGMDLSANSWKEMQGKYKATALKDVDSDHIPDAFIVYKQTRFGNKISLLGTNNKKTAKSDVVKKVIQLCKTSGWFLEASLKMEDIMKSSGAPVVTDEAKIQAIVGPDKKVQFIGDGYYTRSLSKVSKRITKRLYGKPR
Ga0211733_102310316	F082159	N/A	NMVLALTKEVAALGVKVEYLTKENDKLEKALPKTRKQING