Scaffold Ga0211733_10225154

Overview

Basic Information

• Taxon OID: 3300020160
• Scaffold ID: Ga0211733_10225154
• Source Dataset Name: Freshwater lake microbial communities from Lake Erken, Sweden - P4710_105 megahit1
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: SciLifeLab
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 5211
• Total Scaffold Genes: 15
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (6.67%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Lake Microbial Communities From Lake Erken, Sweden

Source Dataset Sampling Location

• Location Name: Lake Erken, Sweden
• Coordinates
  • Lat. (^o): 59.83763399
  • Long. (^o): 18.6203826
  • Depth (m): 0 to 10

Associated Families

Family	Category	Number of Sequences	3D Structure?
F041191	Metagenome	160	Y
F044325	Metagenome	154	Y
F062749	Metagenome	130	Y
F102493	Metagenome	101	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0211733_102251543	F041191	N/A	MKLLWKPTKLTCEFIVPDLAKSHGVQKVIGFSRGWHHYNSIRLGIRKEDTYIVLYFYAYIDGQRVIQRLGRFEIGEQVSVDLQWGYYIECRANDKYAFRIAPKRSFPIGYQLYPYAEKDGVRGVEVDIDIVIMDLIIN
Ga0211733_102251544	F062749	N/A	MKTKASLILWVVAALFMSFWAVKFAMTGVFFGNSELLTFTISFCASLTSAVCGAGFMQQWLKK
Ga0211733_102251545	F102493	N/A	METTLTLHWEFEQPDFENGIRGGWVLTDITNGKIPIHLSPKLEQLINEELDPENL
Ga0211733_102251547	F044325	N/A	MKQLIQKLLFGYRKNPNAYTPKGGAKLTQQGGNAEAIHSALVLMQYNIRHAERIN