Scaffold Ga0211733_10218887

Overview

Basic Information

• Taxon OID: 3300020160
• Scaffold ID: Ga0211733_10218887
• Source Dataset Name: Freshwater lake microbial communities from Lake Erken, Sweden - P4710_105 megahit1
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: SciLifeLab
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 13949
• Total Scaffold Genes: 15
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 8 (53.33%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Lake Microbial Communities From Lake Erken, Sweden

Source Dataset Sampling Location

• Location Name: Lake Erken, Sweden
• Coordinates
  • Lat. (^o): 59.83763399
  • Long. (^o): 18.6203826
  • Depth (m): 0 to 10

Associated Families

Family	Category	Number of Sequences	3D Structure?
F010026	Metagenome / Metatranscriptome	309	Y
F049570	Metagenome	146	Y
F068781	Metagenome	124	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0211733_1021888711	F049570	AGAAGG	MAVTFPSIAPTSRGFTAPRWPTSGITSQSGVTTRRLWGSRPSQAKLSFGFDNITDDNAALIAQAYNSAKGATTDLTLPAVLFSGASSALTAWLDGSATGAGLQWFFSEEPPSIESSGSPGRSNVRVTLIAELRL
Ga0211733_1021888713	F068781	N/A	MTWRKWIGLPHEFGADPEQGKAADCLLMVWRILDDAGIDHPEFNAHWLDIARQGDWPALEALWQVGTTELDQPKEYAVTLFHNGPNGLGVGIVVDRGLLLVHHRRGVRWVPLSYMPELRFYAFR
Ga0211733_102188875	F010026	AGGA	MAVKSKTGTSSVQHVPGKPKLTAQGQGKRSKPNHNRKKLRGQGR