Scaffold Ga0211733_10198436

Overview

Basic Information

• Taxon OID: 3300020160
• Scaffold ID: Ga0211733_10198436
• Source Dataset Name: Freshwater lake microbial communities from Lake Erken, Sweden - P4710_105 megahit1
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: SciLifeLab
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 6049
• Total Scaffold Genes: 13
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 8 (61.54%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (50.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Crocinitomicaceae → unclassified Crocinitomicaceae → Crocinitomicaceae bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Lake Microbial Communities From Lake Erken, Sweden

Source Dataset Sampling Location

• Location Name: Lake Erken, Sweden
• Coordinates
  • Lat. (^o): 59.83763399
  • Long. (^o): 18.6203826
  • Depth (m): 0 to 10

Associated Families

Family	Category	Number of Sequences	3D Structure?
F006220	Metagenome	378	Y
F011390	Metagenome	291	Y
F095470	Metagenome	105	N
F103253	Metagenome	101	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0211733_1019843613	F103253	N/A	FQLAGADIISGFDAFVNADGSYLIEHSYSDIKGDEHFFIYEWDKSQKKRRTIYEGYKRQSVLIGLVKNVNIPESTKEAILKNYTFDEEDLELEKNANS
Ga0211733_101984363	F011390	GAG	MMKIQTTNYGLCSVKKHKYQTNGNLGLSLIDEDGCPVTYITTNIFPMAENEFCANIFNIGFTLWNDIATSGLFEQTGEKVPSGYCEYPVCKLIVDID
Ga0211733_101984366	F006220	AGG	MKKFKKFVEELALASGTEMMRASQMRPTSFKDKSKYSRKAKHKSRQENNSGDSSL
Ga0211733_101984368	F095470	N/A	MRVDMKKVIWVSDSLEPWNHSHHYEPLIEDLTGFNLTENLCSETVKYMAKRLKDTPYQRRFRSKYSIFENEYVALVEKFKTQADNNGKIEVK