NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0211733_10187834

Scaffold Ga0211733_10187834


Overview

Basic Information
Taxon OID3300020160 Open in IMG/M
Scaffold IDGa0211733_10187834 Open in IMG/M
Source Dataset NameFreshwater lake microbial communities from Lake Erken, Sweden - P4710_105 megahit1
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterSciLifeLab
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)33985
Total Scaffold Genes51 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)49 (96.08%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Lake Microbial Communities From Lake Erken, Sweden

Source Dataset Sampling Location
Location NameLake Erken, Sweden
CoordinatesLat. (o)59.83763399Long. (o)18.6203826Alt. (m)Depth (m)0 to 10
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001629Metagenome660Y
F042304Metagenome / Metatranscriptome158Y
F074583Metagenome119Y

Sequences

Protein IDFamilyRBSSequence
Ga0211733_1018783417F042304AGGAGVRKLIETYRKCPTPSNRAKLQTYLQKHMMAACMATPEEIAFLKANEFKV
Ga0211733_1018783427F001629GAGGMILSQGKLADGLVDDLLEAVHKYDETLYMATVIGCLELVKQQLINESLETDDDE
Ga0211733_1018783436F074583AGTAGGMKQHRETPDFKTWQLDTLAKFATEVYLRLQDEQAANEQLRLDLKDAMKLARIQNMKENAA

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