Scaffold Ga0211733

Basic Information
Taxon OID	3300020160 Open in IMG/M
Scaffold ID	Ga0211733_10067715 Open in IMG/M
Source Dataset Name	Freshwater lake microbial communities from Lake Erken, Sweden - P4710_105 megahit1
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	SciLifeLab
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300020160 Open in IMG/M

Scaffold ID

Ga0211733_10067715 Open in IMG/M

Source Dataset Name

Freshwater lake microbial communities from Lake Erken, Sweden - P4710_105 megahit1

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

SciLifeLab

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	8214
Total Scaffold Genes	19 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	3 (15.79%)
Novel Protein Genes	6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Associated Families	6

Scaffold Components

Scaffold Length (bps)

8214

Total Scaffold Genes

19 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

3 (15.79%)

Novel Protein Genes

6 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

0 (0.00%)

Associated Families

Taxonomy
Not Available	(Source: )

Taxonomy

Not Available

(Source: )

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Lake Microbial Communities From Lake Erken, Sweden

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Lake Microbial Communities From Lake Erken, Sweden

Source Dataset Sampling Location
Location Name	Lake Erken, Sweden
Coordinates	Lat. (^o)	59.83763399	Long. (^o)	18.6203826	Alt. (m)	Depth (m)	0 to 10
Location on Map

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Source Dataset Sampling Location

Location Name

Lake Erken, Sweden

Coordinates

Lat. (^o)

59.83763399

Long. (^o)

18.6203826

Alt. (m)

Depth (m)

0 to 10

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001775	Metagenome / Metatranscriptome	636	Y
F014605	Metagenome / Metatranscriptome	261	N
F069672	Metagenome	123	Y
F084121	Metagenome / Metatranscriptome	112	N
F091646	Metagenome	107	Y
F093739	Metagenome / Metatranscriptome	106	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0211733_1006771513	F069672	N/A	MRLIFILFSFISLECNAQYYVMVAPNVAFDTKLQDTKNLLGGTIEIGKYFGDTAIGINSGWWTFDKKDFYQEIMATFPIYDRFSVSAAIGYFYSHKDITMEYDFNYTIPMELGYSFVLSYGAQSAFGDTFGAYSIGVNKDFKLR
Ga0211733_1006771516	F091646	N/A	MPLKCLIFGKRNAITKMNILQKDEIGVPSTLVAIFANVFQAIGVDFINVVFTMVISLLSIVYLVYKIKNEKAIFDKRKDEEGK
Ga0211733_1006771517	F014605	N/A	MKVNLAVAVTDIEGNEIPNERGEQMLLSKLVGNALFTAEDKDDPIRVYELAKKIYYSEGEIEMTKSDADLIKEKVKAKGFTVLILAPLYEALADK
Ga0211733_100677153	F084121	N/A	MPKRKVASRSDYTLKRRFINKFNEYTPWQDIGHGEWLSLEDVQDKIKVLVQNYRSKHVEVWFEKDGKLLDYNGNVTDEPIKFIPK
Ga0211733_100677155	F093739	N/A	MKYSKDQIKRAVRSCVFCERNGIKADMEMEDHPEAGDIFYNYFCGAVEPRLAELLQNPRYIIKLELIQRHLIHNYR
Ga0211733_100677158	F001775	N/A	MEDKERIKIATLSFMIGVILAFVVVPRPKYEEVYKFTTKVKTDTIYSRHIDTVYVPKNKIKTEVLRDTVLIDFKPQISLFETTFPFEYGSTKVSGEVLGEVLKMTATSDYNIPVVTNTITNTETKTIIQKPKGIYLGGVVSSKMELGAKVAYLDNKYLFEYQYQPFQKVHQIGVSKKLF

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0211733_10067715

Overview

Ecosystem & Geography

Associated Families

Sequences